Solea senegalensis (Senegalese sole): 122771184
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Entry
122771184 CDS
T07721
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122771184
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssen03041
]
122771184
03009 Ribosome biogenesis [BR:
ssen03009
]
122771184
Enzymes [BR:
ssen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122771184
Spliceosome [BR:
ssen03041
]
Complex A
U2 snRNP components
U2 related factors
122771184
Complex B
122771184
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
122771184
Ribosome biogenesis [BR:
ssen03009
]
Eukaryotic type
90S particles
Helicases
122771184
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
SRP54
Flavi_DEAD
nSTAND3
AAA_29
AAA_7
Atrophin-1
CoV_nucleocap
Motif
Other DBs
NCBI-GeneID:
122771184
NCBI-ProteinID:
XP_043884519
LinkDB
All DBs
Position
LG6:22664941..22672101
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AA seq
762 aa
AA seq
DB search
MSKRHRLDLGDDYSTSKKRSDGRDRDRDRDREDRSRDRDRDRDRDRDRDRDRDLKPSSVP
SNSMTAAVGIQPLKQMAVHQQINPFTNLPHTPRFYEILKKRLQLPVWEYKESFSDIITRH
QSFVLVGETGSGKTTQIPQWCVDMVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDVML
GQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILM
GVLKEVVRQRADLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLE
AAIRTVIQIHMCEEEEGDCLLFLTGQEEIDEACKRIKREVDDLGPDVGDIKIIPLYSTLP
PQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV
ESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQ
LKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAK
MVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHA
FKQNHESNQWCYDNFVNYRSLMSADNVRQQLSRIMDRFSLPRRSTEFTSRDYYINIRRAL
CTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDI
KPEWLVKIAPQYYEMGNFPQCEAKRQLERIIAKLETKEYSQY
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacatcgcttggatttaggcgacgattactccaccagtaagaagaggtct
gatggaagagaccgagatcgtgacagagaccgcgaggaccgctccagggacagggatcga
gatagggatcgtgacagggacagagaccgggacagagacctgaagccttctagtgtgccc
tctaacagcatgacagctgcagtgggcatacaacccctcaaacagatggcggtgcaccag
caaattaatccgtttaccaatttaccacacacaccacgtttctatgagatcctgaaaaag
aggttacagcttcctgtgtgggagtacaaggagagcttcagcgacatcattacacgtcac
cagagctttgtccttgtcggagaaactggctctggaaaaacgacacagatccctcagtgg
tgcgtggacatggtgagaggtttgcctggtcctaaacgagcagtggcctgtactcagccc
agaagagtggcagccatgagtgtggctcaaagagtggcagatgaaatggacgtgatgctc
ggacaggaagtcggttactctatccgatttgaggactgtagctctgccaagactatattg
aagtacatgacagatggtatgttattaagagaggctatgaatgacccactgctggagcga
tatggtgtgatcattttggatgaggcccacgagcgaactttggccacagatatcctgatg
ggagttctcaaggaggtggtgcgtcaaagagcggatctgaaggtgattgtcatgagtgcc
acgctagatgctggaaagttccaggtttacttcgacaactgtcccctgctgactattcct
gggcgtacgcaccctgtggagatcttctacacccctgaacctgagcgagattaccttgag
gcagcgatccgtactgtcattcagattcatatgtgtgaggaagaggagggtgactgcctc
ctcttcctcaccggtcaagaggaaattgacgaggcctgcaagcgaatcaagcgtgaggtt
gatgaccttggacctgacgttggcgacattaaaatcattccactgtattccacgctgccg
ccacagcagcagcaaaggatcttcgagccgcctcccccgaggaagcccaatggtgcaata
ggaagaaaggttgtcgtgtcaacaaacattgctgaaacctctctaacaattgatggtgtg
gtgtttgtcattgatcctggatttgctaaacagaaggtctacaatcctcgtatccgagtt
gagtctttgcttgtcaccgccatcagtaaagcttctgcccagcagagggcgggacgagct
ggcagaacacgtccaggaaaatgtttccgcctctacacagagaaggcctacaaaacagag
atgcaggataacacatatccagagattcttcgatccaacctgggatctgttgtgctgcag
ctgaaaaagcttggtattgacgacctggtgcattttgatttcatggatccaccagctcct
gaaacattaatgagggccctggaactgctgaattacctcgccgctctcaatgatgatggt
gacctgacggagctgggctccatgatggcggagtttcccctggacccccagctggctaag
atggtcattgccagctgcgagtttaactgctctaatgagatcctttccattactgccatg
ttgtcagtcccacagtgttttgtccgccccacggaggctaagaaggcagctgacgagtcc
aagatgaggtttgctcacattgacggagaccacttgacgctgctcaacgtctaccatgcc
ttcaaacaaaaccatgaatctaaccagtggtgctatgacaactttgtcaactaccgttca
ctgatgtctgctgacaacgtgcggcaacagctgtcgaggatcatggaccgattcagcctg
ccccgtcggagcacggagttcaccagcagagattactacatcaacatccgccgggcgctc
tgcaccggcttcttcatgcaggtggctcatctggagcgcacaggtcattacctcacggtg
aaagacaaccaagtggtccagctgcacccgtcgactgtgctggaccacaagcctgaatgg
gtgctctacaacgagtttgtcctcaccaccaagaactacatccgcacttgcacagacatc
aagccagagtggctggtgaagatcgctccccagtactatgaaatgggtaacttcccacaa
tgtgaagctaaaagacagctggagcgaatcattgccaaattggagactaaggaatattct
cagtactga
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