KEGG   Solea senegalensis (Senegalese sole): 122771449
Entry
122771449         CDS       T07721                                 
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4 isoform X1
  KO
K07573  exosome complex component CSL4
Organism
ssen  Solea senegalensis (Senegalese sole)
Pathway
ssen03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ssen00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    122771449 (exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssen03019]
    122771449 (exosc1)
Messenger RNA biogenesis [BR:ssen03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     122771449 (exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     122771449 (exosc1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 122771449
NCBI-ProteinID: XP_043884961
LinkDB
Position
LG6:complement(7768787..7772511)
AA seq 211 aa
MSPMKLCVPGDKLCSTEDCIPGTGVYLRHGYIYSSLAGYVLRKNEGEEVRGVVAAVGRRV
RHVIQLPVISVVRETETQLLPDVGAIVTCKVTSINPRYAKVHILYVGSTPLKDRFRGTIR
KEDVRATEKDKVETYKSFRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSETGVQM
VPISWCEMQCPRTHNKEFRKVARVQPEYLQA
NT seq 636 nt   +upstreamnt  +downstreamnt
atgtcgcccatgaagctgtgtgttccaggtgacaaactgtgcagcacagaagactgtatt
cccggcacaggagtatatctacggcacggctacatatactcctcactagcgggctatgtg
ctgagaaaaaacgaaggagaggaggtgaggggtgtggtggctgctgtgggtaggagagtc
aggcatgtgatacagttacctgtgatctcagtagtgagggaaacggaaacacagctgctg
ccagatgtaggagcaatagtcacctgtaaggtgaccagcatcaaccccagatacgccaag
gtccatattctctatgtaggttccacaccactgaaggaccgctttagggggaccatcagg
aaagaagatgtacgcgcaacagaaaaagacaaggtggaaacatacaaaagcttcagacct
ggtgacatcgtccttgcaaaagtgatttccctcggtgacgttcagtccaactacttgtta
acaactgcagagaatgagttgggagttgtagtggcacacagtgaaacaggtgtccagatg
gttcccatcagctggtgtgagatgcagtgtccaaggacacacaacaaagagttccgcaaa
gtggcgcgtgtgcaaccggaatatctacaggcatga

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