Solea senegalensis (Senegalese sole): 122772160
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Entry
122772160 CDS
T07721
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
122772160 (tgfbrap1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssen04131
]
122772160 (tgfbrap1)
Membrane trafficking [BR:
ssen04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
122772160 (tgfbrap1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
TPR-S
Motif
Other DBs
NCBI-GeneID:
122772160
NCBI-ProteinID:
XP_043885827
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Position
LG7:complement(6822957..6834656)
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AA seq
877 aa
AA seq
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MSVKAFELVPAVERDLLMGDKARINIECIECCGKHLYVGTNDCFIHHFLLDEVTSSKGKL
SYSAQKLLHKYLGLKKPVAELRAASALERLIVLCDGIVFLIDMVTLETVPSAAGGGAKIR
GVTAFCINENPVNGDPFCVEMCVLSSKRRTVQIYMVYEDRVQLVKEVSTPEQPCAVSLDG
YFLCLALATQYMILNYNSGASQDLFPYNSEERRPILKRIGREEFLLAAPGGLGMFANAEG
VSQRAPVNWSEGVIGAAVCFPYVVALDENFITIHSMLDQQLKQTLSFRDGHILQDFEGKV
ILASTKAVYVLVPLPLERQIQDLLASHRVEEALTLTEGAQRNIPKDKFQVLHKRILQQVG
FIQFSQLQFREAREHFRKGQLDVRELISLYPLLLPASSSFTRCHPPLHEFADLNHLAQGD
QEKVLLYKNFLISYLGEVRNTEVVNVCREDVDTALLKLYAEQDHESLLDLLASDNTCLLT
DSIPWLEKYHKYFALGLLYHYNGQDSAALQLWIRLADGDLQDSTRTDLFEYIVDFLSSCS
NLDLVWTYADWALLKDPTIGMHIFTKRPLSKDVSQLNPDDVITYLGKHSQALLLYLEYLV
LERRIQKEKFHTHLAVLYLERVLSLQSQSPTDEAQLTTARERLQALLRESNLYLVQLLLD
KMENCEQLLLERATLYGKLEEHERALHILVHQLRDFRSAEAFCLWASSCRDSAYRQQLFH
LLLGVYLDGSHRGQSHAVAAGGSGELEMAAVDLLNRHGEVFDAISVLRLLPESWSLQLLR
PFLGRAVRASMHACRTSQIALGLAHSENLQLLHDRLKERKKQILVSEKKGCHLCHNTFSE
PDVVCLPGAVPVHTHCVAHRVRDSPTKRLLTNSSNHT
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaggcttttgagcttgtccccgctgtggagcgagatctcctcatgggcgac
aaggctcgcatcaacatcgagtgcattgaatgttgtgggaagcacttgtacgtgggtacc
aatgactgcttcatccaccacttcctgttggacgaagtcacttcctccaaaggaaaactg
agttactcggctcaaaagctactgcacaaatacctgggcctcaagaaaccagttgctgag
ctgcgggctgcttctgccttggagcgtctgatagtgctttgtgatggaatagtgtttctc
atcgatatggtgacactggagactgtgccttcagcagcaggtggtggagccaagatcaga
ggtgtgacggcgttttgcattaatgagaacccagtaaatggtgatcccttctgtgtggaa
atgtgtgtactctcctccaagcggcggacagtgcagatttacatggtatatgaggacaga
gtccaactggtcaaagaagtgagcactcctgagcagccctgtgctgtaagtcttgatggt
tacttcttgtgcttggcccttgctacacaatacatgatcctgaactacaactctggagcc
tcccaagacctcttcccttacaacagtgaagagaggaggcccattttaaagaggattggc
agggaggagttcctcttagcagcacctggtggtctaggaatgtttgccaatgcagagggg
gtatctcagcgggctccagtcaactggtcagagggcgtgattggtgccgctgtatgtttt
ccatatgtggtggccttggatgagaacttcatcaccatccatagcatgttggatcaacag
ctgaaacagaccctgtcattcagagatgggcacattctgcaagactttgaagggaaggta
atactggcctccactaaagcagtctatgtcctggtgcccttgccactggagagacagatc
caagacttactggccagtcacagagtggaagaggcgctcaccctcacagagggagcacag
aggaatattcccaaagataagtttcaggttttgcacaaaagaatccttcagcaggtgggt
ttcatacagttcagccaacttcagtttcgagaagcaagagagcacttcaggaagggtcag
ctggatgtgcgagagctgatctctctctacccactactgctgccagcttcctcttcattc
actcgctgccaccctcctctccatgagtttgcagatctcaaccacctggcacaaggtgac
caggagaaagtgcttctgtacaagaacttcctcatcagttatttgggagaggtacgaaac
acagaggtggtgaacgtttgtagagaggatgtggacacagcgttgttaaaactgtatgct
gaacaggatcacgagagccttctagaccttctagcttcagacaatacctgcctgctgaca
gacagcatcccgtggctagagaaatatcacaaatattttgcacttgggctgctctatcat
tataatggtcaagactcagcagcacttcagttgtggattcgtttggcagatggggatctg
caggattccacaagaactgacctttttgagtatattgtggactttctgtcctcctgctcc
aatctggaccttgtatggacgtatgcagactgggccttgctgaaagaccccactataggc
atgcatatctttactaagaggcctctcagtaaggatgtgtcgcaattaaaccctgatgat
gtcatcacgtaccttggaaaacacagccaagcgctgcttctttacttggaatacctggtg
cttgagagaaggatacagaaagagaagttccacacacacctggctgtattgtacctggag
agggtcttgtcactgcaatcacagtcaccaacagatgaggcgcagctgaccacagccaga
gagaggcttcaagcccttctcagggagtccaacctataccttgtacagttacttttagat
aagatggagaactgtgaacagctgctgctagaacgtgcaacactatatggcaaactggag
gagcatgagagagctctgcacatactggtacaccagctcagagacttccgctctgctgag
gccttctgcttatgggcctcgtcttgtcgggactctgcttaccgacagcagctctttcac
ctgctcttgggggtgtatctcgatgggagccaccgtggacagtcccatgcagtagcagca
gggggtagtggagagctggagatggcagcagtggacctcctgaaccgtcacggcgaggtt
tttgacgccatcagtgtcctacggctactccctgaaagctggtcactgcagctgctgcgg
cccttcctgggtcgagcagtcagggccagtatgcatgcctgccgcacttcccaaattgct
ctggggttagctcactctgaaaacctgcaactgctacatgatcggttgaaagaacgaaag
aaacaaatcctggtgtctgaaaagaagggatgccatctgtgccacaacaccttcagtgag
cctgatgtggtgtgtctgcccggcgcagtgcctgtccacactcactgtgtcgcccacaga
gtaagagactcgcccacaaagagactgttaactaatagcagcaaccacacgtga
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