Solea senegalensis (Senegalese sole): 122772325
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Entry
122772325 CDS
T07721
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03420
Nucleotide excision repair
ssen04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122772325 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
122772325 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssen04121
]
122772325 (ddb1)
03400 DNA repair and recombination proteins [BR:
ssen03400
]
122772325 (ddb1)
Ubiquitin system [BR:
ssen04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
122772325 (ddb1)
DNA repair and recombination proteins [BR:
ssen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
122772325 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
122772325 (ddb1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
122772325
NCBI-ProteinID:
XP_043886218
LinkDB
All DBs
Position
LG7:10697461..10728908
Genome browser
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTPEGLRPVKEVGMYGK
IAVMELFRPKGETKDLLFILTSKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVALKDL
HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRD
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVAHQQLIQITSGSVRLVL
QDSKALVSEWKEPQGRNISVAACNHTQVVLAVGRALYYLQILAGELKQISTTEMEHEVAC
LDITPLGEAGTESPLCAVGLWTDISARVLKLPCFTALHKEMLGGEIIPRSILMTTFEGSY
YLLCALGDGALFYFGLDLQTGALSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRRICYQEVSQCFGVLSSRVEIQDVSGTTSAVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGDEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSMVSCRLGKDPSVYFIVGTAMVYPEE
AEPKQGRIVVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTER
KTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaactacgtggtaacagcccagaaacccacggcggtgaacgcctgcatcacc
ggtcacttcacctctgcggaggacctgaatctgctcatagccaaaaacacacgtttggaa
atttatgtcgtcacaccagagggtctcagacccgtcaaagaagtgggcatgtatggaaag
attgctgtcatggaactcttccggccaaagggtgagaccaaagacctgctgttcattctc
acatccaagtacaacgcatgcatccttgaatacaaacagaatggggacagcattgacatc
atcacacgtgcccacggcaatgtccaggatcgtattggtcgtccatctgagacaggcatt
attggaattgtagacccagagtgccgcatgattggtctccgtctttatgacgggttgttt
aaggtgatcccattggaccgggacaaccgtgagctgaaggccttcaacatccgcctggag
gagcttcaggtcatcgacgtgcactttctgtatggctgccaggcaccaactgtctgcttc
atctaccaggacccacagggacgccatgtgaagacctacgaggtttctctgagggagaag
gagttcaacaagggcccctggaaacaggagaatgtggaggctgaggcatcaatggtcatc
ccagtgccagagccatttggtggcgctataatcataggacaagagtccatcacctaccac
aatggagacaaatatttggccattgcaccacctactatcaagcaaagtaccattgtctgt
cacaaccgggtggatcccaatggctctcgctacctgctgggggacatggagggacgtctg
ttcatgctgctgttggagaaggaggagctcatggatggcacagtggctctcaaagacttg
catgtagagctgctcggagagacatctattgctgagtgtttgacctacttggataatggt
gtggtctttgtaggttccagattgggtgattcccagttagtgaagctcaatgtggacagc
aatgaccagggctcatatgtggcggtaatggagacgttcactaatctggggcccattgtg
gacatgtgtgttgtagacctggagaggcaaggccagggccagctggtgacatgctcgggt
gcatttaaggaaggctctcttcgaataatccgtaatggcattggcattcatgagcatgcc
agcattgacctgccgggaatcaaaggtttgtggccacttcgctctgaggcaggcagagac
accgatgacatgctggttctgtcttttgtgggtcaaacacgagtactgatgctgagtggc
gaggaagtggaggagactgaacttcccggctttgtggacaaccagcagacattttactgc
ggcaatgtggcacaccagcagcttattcaaataacatcaggctctgtgcgcttggtgctc
caagacagcaaggcattagtgagtgaatggaaggaaccacagggcaggaacatcagtgtg
gccgcttgcaaccacactcaagtggtgcttgccgttggccgtgccctctactacctgcag
atcctggcaggggagctcaaacagatcagtaccacagagatggagcacgaggtggcctgt
ttggacatcacgcccctgggggaggctggcactgagtcaccgctctgtgccgtgggactg
tggactgacatatcagcccgtgttctcaaactgccctgcttcacagctctgcacaaggaa
atgctggggggagagatcataccccggtcaatcctgatgaccacctttgaaggcagctac
tacctgctctgtgccctgggtgatggagcgctcttctactttggtctggatctgcagact
ggtgccctaagtgagcgcaagaaggtcaccctcggcacccagcccactgtgctgaggacc
ttcagatcactttccacttcaaacgtcttcgcctgctctgaccgaccaactgtcatctat
tcctccaaccacaagctggtcttctccaatgtcaaccttaaggaggtcaactacatgtgt
ccgctcaactctgagggctatcctgacagtctggctctggccaacaacagtactctgacc
attggtaccattgatgagattcagaaactccacattcgcacagttcctctctatgagtca
cccaggcggatctgttaccaggaggtttcccagtgttttggagttctatccagcagggtg
gagattcaggatgtaagcggcaccacatctgctgttcgccccagtgcgagcactcaggct
ctctccagcagcgttagctccagcaagctcttccccagcagcacctctccccatgagacc
tccttcggtgacgaagtagaggtccacagtctgcttgtagtggatcagcacacctttgaa
gttctccatgcccatcagttcctccctagcgagtatgccctcagcatggtgtcatgtcgt
ctgggaaaagacccatcagtgtatttcattgttggcaccgccatggtgtacccagaggag
gctgagcccaagcagggacgcattgtagtcttccactacactgacggtaaactgcaaact
gtggcagaaaaggaggtgaaaggtgctgtttattctatggtggagttcaatggcaaactg
ctggccagcatcaatagtacagttcgtttgtacgaatggacggctgagaaggaactgaga
actgagtgtaaccactacaacaacatcatggccctttacttgaagaccaaaggagatttc
attctggtgggagacctgatgaggtcggtcctgctgctggcatacaaacctatggagggt
aattttgaagagattgctcgcgactttaatcctaactggatgagtgccgttgaaatcctg
gatgatgacaatttcctgggggcagagaacgccttcaatctgtttgtctgccagaaggac
agtgcggccaccacagatgaagagcggcagcacctgcaggaagtgggggtcttccacctc
ggggagtttgtcaatgtcttctgccacggctcgctggtgctgcagaacctgggcgagagc
tccacacccacccaaggctctgtgctcttcggcacagttaacggcatgattggtctggtg
acgtctctgtccgagggctggtacagcctcctcctggacctgcagaaccgtctcaacaag
gtcatcaagagcgtgggcaagatcgagcacagcttctggaggtccttccacaccgagcgt
aagacagagcaggccacaggattcatcgatggggatctgattgaaagtttcctggatctc
ggccgagctaagatgcaggaggtcgttagtactctacagatcgatgacggcagcggcatg
aaacgtgaagccacagtggatgaggtgattaagattgtggaagagctgacgaggattcac
taa
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