Solea senegalensis (Senegalese sole): 122772571
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Entry
122772571 CDS
T07721
Symbol
col11a1a
Name
(RefSeq) collagen, type XI, alpha 1a isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
122772571 (col11a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssen00536
]
122772571 (col11a1a)
Glycosaminoglycan binding proteins [BR:
ssen00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122772571 (col11a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
122772571
NCBI-ProteinID:
XP_043886683
LinkDB
All DBs
Position
LG1:38892122..38962179
Genome browser
AA seq
1810 aa
AA seq
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MEMQRWSTRWKTKRWLMDSTVTAFITLTLVLQAACVTAAEPVDVLKVLDFQNYPEGVTKT
SGFCTNRRASQPDSAYRVAKQVQISAPTTQLFPGNVFPEDFSILTTVRPKSGLQSFLLSI
YNSERVQQLGVEVGRSPVFLYEDQTGKPAPEDYPLFRSLNLADGKWHRVAISVEKKTVTI
IVDCKTTITKPLLRSDHASIDTTGVTVFGTRILDEEVFQGDIQQLLIVADSKAAYDYCEH
YSPDCDTPHGESLQAQEPEYLTDDLNYSDLYDYSEGAIDTIPTDEYSEPQLNNVEDYNTD
IDYETIDDTHTQSPFATSGPYEAAEEDAVGAYVTDAAPVAPEPTALPETVDISDTGAEAY
DFKEYDLKEYDLGEVDNKLYDYGAYDDEYGTASSKPTAAYEDEVGPGVAAETDVSESAIA
GVGGALGQKGEKGEPAVIEPGMLIEGPPGPHGPAGLPGPSGLHGPPGTAGDPGDRGPPGR
AGLPGADGLPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGSPGPMGL
TGRSGPVGLPGSPGLKGEGGDPGPQGPRGIQGPPGQLGKAGKRGRSGADGARGMPGESGS
KGDRGFDGLPGLPGEKGHRGESGPMGPTGSPGEDGQRGEDGEVGPRGLSGESGPRGLLGP
RGSPGPPGSPGVAGIDGPHGPKGNMGPQGEPGPPGQQGTPGTQGLPGPQGPIGPPGEKGP
LGRSGLAGLPGADGPPGHPGKEGPAGEKGAQGSSGPQGPIGYPGPRGVKGADGVRGLKGS
KGEKGEDGFPGFKGDMGIKGDRGELGMIGSRGEDGPEGPKGRSGPNGEAGPLGPAGEKGK
LGVPGLPGYPGRQGPKGSRGFNGFPGANGEKGARGIAGKAGPRGQRGPTGPRGGRGARGP
TGKPGPKGTSGNDGPPGPPGERGPQGPQGPVGFSGPKGPPGPPGKDGLPGHPGQRGETGF
QGKTGPPGPGGVVGPQGPTGETGPVGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGP
SGKDGPPGLRGFPGERGLPGATGPAGLKGGEGPQGPPGPVGSPGERGQAGPGGPIGLSGR
PGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPPGPQGPPGEDGDKGEVGEPGQ
KGSKADKGEQGPPGPAGLQGPIGAPGPAGADGEPGPRGQQGMFGQKGDEGSRGFPGPPGP
IGLQGLPGPPGEKGEMGDVGPMGPPGPPGPRGPQGPSGADGPQGPPGGVGPMGGVGEKGE
QGEAGNPGPPGEHGTGGPKGERGDKGEAGPPGAAGPAGAKGPPGDDGPKGNPGPVGFPGD
PGPPGEPGVAGTDGEAGEKGEDGESGQPGPPGPSGEAGPPGPPGKRGPPGTAGAEGRQGE
KGAKGEAGAEGPAGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGSPGQDGPPGPMGP
PGLPGLKGDLGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGNKGDGGISGSSGP
LGPPGPPGLPGPQGPKGSKGSSGPAGAKGDTGSIGPPGPPGPPGEVIQPLPYQSPKKTKR
SSNMQSDAASMDYGDGMEGMEGIFGSLNNLKQDIERMKYPMGTQNNPARTCKDLQLCHPE
FPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSNGVRISSWPKEAPGTWFSEFK
RGKILSYADTEGNSINMVQMTFLRLLTASARQNFTYSCHQSVAWRDASTDSYDRALRFLG
ANDEEMSYDNNPYIKALSDECATRKGYGKTVMEINTPKIDQVPIIDIMLTDFGDPNQKFG
FEVGPVCFLG
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaaggtggtccacaaggtggaaaacgaaacggtggcttatggattccact
gtaacagcattcatcactttaaccctggttctacaggctgcttgtgtcacagcagctgaa
ccagtggacgtcctaaaagtattagattttcaaaattaccccgaaggagtgacaaaaacg
tcaggattttgcacaaaccgaagagcatcacagccggactcagcttacagagttgccaag
caggtccagatcagtgcccccaccacgcagttattcccaggaaatgtttttcctgaggac
ttctccatcctgaccacagtgcgtcccaagtctggcctccagtctttcttgctgtccatt
tacaacagcgagagggtgcagcagctgggcgtggaagtgggacgctcacctgtcttcctg
tatgaggatcagactggcaaaccagccccggaggactacccactgttccgcagtctcaac
cttgctgatggaaagtggcaccgtgtcgccatcagtgtagagaagaagacggtcactatc
attgtcgactgtaagacgacgatcaccaagcctctcctcaggagtgaccatgcgtctatc
gacaccactggcgtcaccgtgtttggcaccaggatcctggacgaggaggtcttccagggt
gacatccagcaacttctgatcgtggctgattccaaagcagcatatgactactgtgaacac
tacagcccagactgtgacactccccatggtgaatcgctgcaggcccaggaaccagagtac
ttaactgatgatttaaattactctgacctctatgattactctgagggagccatagacacc
attccaactgatgagtattcagaaccacagctaaacaatgtagaagattacaatacagac
attgactacgaaactatagatgatactcatactcagtccccctttgccacgagtggaccc
tacgaggctgcggaggaggatgctgtcggtgcttatgtcaccgatgctgctcccgttgcc
ccggagcccaccgctctcccagaaacagtggacatctcggacactggtgcggaagcatat
gactttaaggaatatgacctaaaggagtatgacttgggcgaggttgacaacaagttgtat
gattacggggcgtatgatgatgagtatggcacggcctcgtccaagcccacggcggcctac
gaggatgaggtggggcccggggtcgctgctgaaactgacgtttctgagagcgccattgct
ggagtcggaggagccctcggccagaagggagagaagggtgagccggctgtgattgaacca
ggcatgctgattgaaggaccaccaggacctcacggcccagctggtctcccaggtccatct
ggactacacggacctccaggcactgctggagatcccggtgacaggggccctcccggccgt
gctggactccctggggctgatggtttaccagggcctcctggtaccatgctaatgttacca
ttccgttttggcggagatggtgagaagggtccggtggtgtcagcccaggaagcccaagcc
caggccatcctctcccaggccagactggctatgaggggatcccctgggccgatgggtttg
acaggaagatcaggaccagtgggtctacctggtagtcctggactaaaaggtgaaggcgga
gaccctggccctcagggtcctcgtggcatccaggggcctccaggacaactcggcaaagct
ggcaagaggggtcgctccggagccgacggtgcccgggggatgcctggagagtcaggctct
aagggtgaccgaggctttgatggactccccggcctgcctggtgaaaagggtcacaggggg
gagtcagggccaatgggacccacaggatctccaggagaggatggacagagaggcgaagac
ggagaggtcgggccccgaggattatctggagagagtggtcctagaggtttgctgggacct
cgtggttctccaggaccccctggatctcctggtgttgctggaattgacgggcctcatggt
cctaaaggaaacatgggaccacaaggagaaccaggcccacctgggcagcaaggaacccca
ggaacacagggtcttcctggacctcaaggccctattggaccacctggagaaaaaggacct
ctgggcaggtcggggttggcgggattacctggagctgatgggcctcctggtcatcctggt
aaagaggggccggctggagagaaaggagcacaaggttcatcaggcccacagggtcctatc
ggttatcctggccctcgtggcgtgaagggagctgatggagtccgtggtctgaaggggtca
aagggagagaagggtgaggacggtttcccaggtttcaagggagacatgggaatcaaagga
gaccggggagagcttggcatgattgggtcccgaggagaagatggtcctgaaggtcctaaa
ggtcgatcaggacccaacggagaagcagggccccttggacctgctggggaaaagggtaaa
cttggtgtcccaggattgccaggatatccaggaagacaaggaccaaagggctcacgtggt
ttcaatgggttccccggagccaacggagagaaaggagccaggggcatcgcaggtaaagct
ggtccaagagggcaaagaggcccgacgggtcctcgtggtggcagaggagccagaggtcca
acaggaaaaccaggacccaagggcacatcaggcaacgatggtcctccaggcccacctggt
gagagaggacctcaaggaccccagggacctgttggcttctctggaccaaagggcccccct
ggaccacctggaaaagacggactgcccggacatcctggccagcgaggagaaacgggtttc
caaggtaaaactggtccaccaggtccaggaggtgttgtcggaccgcagggacccactgga
gagactggtcccgttggtgagcgaggccaccctggacccccaggtccacctggagaacag
ggtcttcccggtgcagctggaaaagagggagcaaagggagatcctggaccacagggaccc
agtggtaaagacgggccccctggccttcgaggtttccctggagagagaggtctacctggt
gccacgggtccagcaggtctgaagggaggagaaggtccgcaaggtccacctggtcccgtt
ggttctcctggtgagagaggtcaagctggtccaggtgggcccattggtttgagtggtaga
cctggtcctcagggtcctccaggacctgctggtgaaaaaggagcacctggtgagaaaggg
cctcaaggtccagctggtcgtgatggtgtccagggtcctgttggtctgcctgggcctccc
ggaccacagggtccacctggagaggatggagacaagggagaagttggagagcctggtcag
aaaggaagcaaagctgacaagggagaacagggtcctcctggcccagctggtctccaaggt
cccattggtgccccaggtcctgctggagctgatggagagcctggtcccagaggtcagcaa
ggaatgtttggacagaagggagatgaaggttccagaggtttccctggtcctcctggtccc
atcggtctgcaggggcttcctggaccccctggtgagaagggagagatgggtgatgttggc
cccatgggtccgcctggtccccctggtcccagaggtcctcagggtcctagcggagctgat
ggtccacaaggtcctcctggtggtgtaggacccatgggaggtgtgggtgagaagggtgaa
caaggtgaggctggaaacccaggaccacctggagagcacggaactgggggacccaaaggg
gagagaggagacaaaggagaagctggtccacctggagctgctggacctgctggagccaaa
ggcccccctggagacgacggtccaaagggcaaccctggtcctgttggattcccaggagac
cctggccctcctggagagccaggtgttgctggcactgatggggaagcaggagagaaggga
gaggacggtgagagtggtcagccgggacctccaggtccatcaggagaagctggcccacct
ggaccaccaggcaagagaggacctccagggactgctggtgcagagggcaggcaaggagag
aagggcgccaagggtgaagctggtgcagagggaccagcaggtaaaacaggaccagttgga
ccccagggacctgcaggaaagcccggtccagaaggtctacgtggaatccccggtcctgtt
ggtgaacaaggacttccaggctctccaggacaagatgggccacctggtcccatgggtcct
cctggtcttccaggtctgaaaggtgaccttggatctaagggtgaaaagggtcacccaggt
ttgattggtttgattggacctcccggggagcaaggagagaaaggtgaccgcggtttgccc
gggccccagggttcacctggtaacaagggtgacggcggtatttctggatcttccggtcct
ctgggtcctccaggtccccctggtctgcctggtcctcaaggccccaagggatccaagggt
tcctctggtcctgctggtgcaaaaggagacactggttctattggtcctccaggtcctcct
ggtccacctggtgaggtcattcagccactgccctaccagtcacctaagaagacaaagcgc
tccagcaacatgcagtcggacgcagccagtatggactatggcgatggcatggagggcatg
gagggcatcttcggctcactcaacaacctcaaacaggatattgaacgcatgaagtacccc
atgggcacacaaaacaaccccgcaaggacatgcaaagatctgcagctgtgtcacccagag
ttccctgatggtgaatactggattgatccaaaccaaggctgctcaggggattccttcaaa
gtctactgtaatttcactgctgggggcgaaacctgcatctatccagataagaagtcgaat
ggagtcagaatatcctcatggcccaaagaagcccctgggacatggttcagtgaattcaaa
cgtggaaaaatactatcctacgctgacaccgagggaaactcaataaacatggtacagatg
accttcctcagactactgacggcctcagccaggcaaaacttcacctacagctgccaccag
tctgtggcgtggcgcgacgcctccaccgacagctacgacagggcactgcgcttcctgggc
gccaacgatgaggagatgtcctacgacaataatccttacatcaaggccctctcagatgaa
tgcgcgacgaggaagggctacggaaagactgtgatggagattaatactcccaaaatcgat
caggttccaatcattgatatcatgttgactgactttggggaccctaaccagaagtttggg
ttcgaagttgggcccgtctgcttccttggctaa
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integrated database retrieval system
