Solea senegalensis (Senegalese sole): 122773256
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Entry
122773256 CDS
T07721
Symbol
copa
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
ssen
Solea senegalensis (Senegalese sole)
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssen04131
]
122773256 (copa)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssen04147
]
122773256 (copa)
Membrane trafficking [BR:
ssen04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
122773256 (copa)
Exosome [BR:
ssen04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122773256 (copa)
Exosomal proteins of bladder cancer cells
122773256 (copa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
TPR_COPA_B
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_RFWD3
ANAPC4_WD40
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
122773256
NCBI-ProteinID:
XP_043887717
LinkDB
All DBs
Position
LG1:complement(4344838..4357916)
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AA seq
1221 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWVLASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVETD
VRGISGVDLFGASDAIVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH
PNLNLFAAGHDSGMIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSG
SKFPVFSMSYNPAENAVLLCNRATNLENSTYDLYSIPKESDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEIVKKIQVPNCEEIFYAGTGSLLLRDADGVTLFDVQQK
RSLATVKIAKVKYVVWSADTSHVALLAKHAIMICNRKWESLCSIHENIRVKSGAWDESGV
FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLTIDPTEYRFK
LALVNRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV
ALEAAKALDERSCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMM
KIAEIRKDMSGHYQAALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAESLKETFDP
EVETVPEVDPNAQLLQPPPPINPLDTNWPLLTVSKGFFEGAIAAKGKAGQMAADLDMDAP
GGEGWGDDAELQLDDDGFMDAQEGFGDDGMGKEEGGGWEVEEDLDLPPELDIPAAGGAGE
DGFFVPPTKGMSPTQMWCNNSQLPADHILAGSFETAMRLLHDQVGVVNFGPYKSLFMQTF
SRGRTCYLGLPSLPCLRSQPQRNWKDCGAKQGLPAVGLRLSDLISRLQQCYQLTTSGRFE
EAVERFRAILLSVPLLVVDNKQEIAEAQQLITICREYIVGLTMETERKKLPKDTLEQQKR
LCEMAAYFTHCNLQPVHMVLVLRTALNLFFKLRNFKTAAGFARRLLELGPKPDVAQQTRK
ILAACEKNLTDAHQLNYDPHNPFDLCAASFVPLYRGRPVEKCPLSGACYCPPYKGQTCRV
TQVTEVGKDVIGLRVSALQFR
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgttaactaaatttgaaacgaagtcggcccgtgtaaaaggtctaagtttccatcccaaa
agaccatgggttcttgcaagtttgcacaacggtgtcatccagctgtgggattatcggatg
tgcaccctgatcgacaagttcgatgagcatgacggtcccgtcagaggaatcgatttccac
aaacagcagcctctgtttgtgtctggaggtgatgattacaaaattaaggtgtggaactac
aagctgaggcgctgcctcttcactctccttggacaccttgactacatccgaaccaccttc
ttccaccatgagtacccctggattttgagtgcctcggatgaccagaccatacgcatctgg
aactggcagtctaggacctgcgtctgtgtcttgaccggccataatcactacgtgatgtgc
gcccagttccatccatctgaggacctggtggtgtcagccagtctggaccagactgtacga
gtgtgggatatctctggtctgaggaagaagaatttgtctcctggtgctgtagagactgac
gtgcgtggcatcagtggtgttgacttatttggtgcctccgatgccatcgtcaagcatgtt
cttgagggccacgaccgtggagtcaactgggctgctttccaccccactatgcctctcatc
gtgtctggagctgacgacaggcaggttaaaatctggagaatgaatgaatccaaggcctgg
gagctagatacctgccgtggtcactacaacaacgtgtcatgtgccgtcttccacccacgc
caggaactcatcctgtccaactctgaggacaagagtattcgggtgtgggacatgtccaag
agaactggagtgcagactttccgtcgagatcatgatcgtttctgggttctgggcgctcat
ccaaatctcaacctgtttgctgcaggtcacgacagcggcatgatcgtgtttaagctggag
cgtgagcgtccggcgtacgctgtgcatgggaacatgttatactacgttaaggatcgcttc
ctccgccagctggattttaacagcagcaaagacactgctgtcatgcagctacgcagtggc
tccaagttcccagtgttcagcatgtcatacaatcctgctgagaacgccgtcctgctctgc
aatagggcaaccaacctggagaatagcacctatgacctgtactctattcctaaagaaagt
gactctcagaaccctgatgcacctgaggggaagaggtcctccggactgacagcagtctgg
gtggccaggaacagatttgctgtcctggaccgaatgcactctctgctgatcaagaacctg
aaaaatgaaatagtgaagaaaatccaggttccaaactgtgaggaaatcttctacgcaggg
acaggctcactgctgctgcgtgatgctgacggcgtcacactgttcgatgtgcagcagaaa
cgctccctggccactgtcaagatcgccaaggtcaagtatgtggtgtggagtgcagacacg
agccacgtggccctgctggctaaacatgccatcatgatctgcaaccgtaagtgggagagt
ctctgcagtattcatgaaaacatccgagtgaagagtggagcctgggacgagagtggagtc
ttcatctacaccacctccaaccacatcaaatatgccctcacctctggggatcacggcatc
atcagaacactggacctgcccatttacgtgacccgtgtgagaggaaacagtgtttactgc
ctggacagagagtgcaggccacgcgtcctcaccatcgacccaacagagtatcgcttcaaa
ctcgcacttgtcaaccgtaaatacgatgaggtgcttcacatggtgcgtaatgccaagctg
gtgggtcagtctatcattgcctacctgcagaagaagggttacccggaggtggcgctgcac
tttgtcaaagatgagaagactcgctttagtttggcgctggagtgtggcaacattgaggtg
gcgctggaggcagcaaaggccctggatgagcgcagctgctgggagcgcctgggtgaggcg
gcactgctgcagggccaccaccaggttgtggaaatgtgctatcagaggactaagaacttt
gacaagctcaccttcctttacctcatcactggcaacctggccaagctgcgcaagatgatg
aagattgctgagatcaggaaggacatgagcggtcactaccaggcagcgctctacctggga
gacgtcagtgagagggtccgcattttgaagaactgtggacagaagtctctggcgtacctg
accgcagccacccatgggctcgatgaagaggctgaatcacttaaggagacatttgaccca
gaagtggagacggtgcctgaggttgatccaaatgcacagctgctgcagccccctccaccc
atcaaccctctggacaccaactggccactgctcactgtatcaaagggcttctttgaagga
gccattgcagcaaaagggaaggcaggacaaatggctgctgatctggacatggatgctcca
ggaggtgaaggctggggagacgatgctgaactccagctggatgacgatggtttcatggat
gcccaggaaggatttggggatgatgggatggggaaagaggagggaggaggctgggaagtg
gaagaagatctggaccttcctccagagctggacataccagctgcaggtggagcaggagaa
gacggtttctttgtcccaccaaccaagggcatgagtccaacccagatgtggtgcaacaac
tcccagctgccagcagaccacatcctggctggctctttcgaaactgccatgagactgctg
cacgaccaagttggagttgtgaactttggcccatacaagtcactgttcatgcagacgttt
tcgagagggcgcacctgttacctggggctgccgtccctaccctgcctgcgcagccagccc
cagaggaactggaaggactgtggagcaaagcagggcctgcctgctgtgggtttgcgcctc
tccgacctcatctctcgtctacagcagtgctaccagctgaccacttctggccgctttgag
gaagctgttgagcgcttcagagccatcctgctctctgtgcctctgctggtggttgataac
aagcaggaaattgcagaggctcagcagctgatcaccatttgcagagagtacatagtgggt
ttgaccatggagacagagaggaagaagctgccaaaagacactttggagcagcagaagagg
ctctgtgagatggctgcgtatttcacccattgtaatctccagcccgtccacatggtgctg
gtgttgcgcacagctctcaacctcttcttcaaactgcgtaactttaagaccgctgccggc
tttgcacgacgcctgctggagctgggaccaaagccagatgttgcacagcagactcgcaag
attttggctgcctgcgagaagaatctgacagatgctcaccagttgaactacgaccctcac
aatccatttgacctgtgcgctgcctcttttgtcccactgtaccgtggacgccctgttgag
aagtgccctctgtctggagcctgctactgtcctccatacaaaggccagacctgcagggtc
acacaggtgacagaggttggcaaggatgtgattggtctgcgtgtgagtgcacttcagttc
cgttga
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integrated database retrieval system
