Solea senegalensis (Senegalese sole): 122773337
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Entry
122773337 CDS
T07721
Name
(RefSeq) lissencephaly-1 homolog
KO
K16794
platelet-activating factor acetylhydrolase IB subunit alpha
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen00565
Ether lipid metabolism
ssen01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09100 Metabolism
09103 Lipid metabolism
00565 Ether lipid metabolism
122773337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssen03036
]
122773337
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssen04147
]
122773337
Chromosome and associated proteins [BR:
ssen03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
122773337
Exosome [BR:
ssen04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
122773337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EML_2
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
NBCH_WD40
Beta-prop_EML
Beta-prop_Nup120_160
Beta-prop_Vps41
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD40_RFWD3
LisH
LisH_PAC1
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
Nucleoporin_N
Beta-prop_NUP159_NUP214
Beta-prop_WDR11_2nd
Pox_A_type_inc
DUF2570
ARMC9_LisH
SutA-RBD
LisH_2
Motif
Other DBs
NCBI-GeneID:
122773337
NCBI-ProteinID:
XP_043887882
LinkDB
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Position
LG8:13905998..13934126
Genome browser
AA seq
410 aa
AA seq
DB search
MVLSQRQRDELNRAIADYLRSNGYEEAYSTFKKEAELDNNEELDKKYAGLLEKKWTSVIR
LQKKVMELESKLNEAKEEITLGGPVSQKRDPKEWIPRPPERYALSGHRNPVTRVIFHPVF
SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDQTGKLLASCSADMTIKLWDFQ
GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMV
RPNQDGTLIASCSNDQTVRVWVVASKECKAELREHEHVVECISWAPESAHPTILEATGSE
SKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGILFHPGGKFIVSCADDK
TLRIWDYKNKRCMKTLCAHEHFVTSLDFHKAAPYVVTGSVDQTVKVWECR
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggtgctgtcacaacgacaacgagatgaattaaatcgagcgatagcagattatctacgt
tccaatggatatgaagaggcatattccactttcaagaaggaggcagaattagataataat
gaagaattggataagaagtacgctggccttttggaaaagaaatggacctctgtcatcaga
ttacaaaaaaaggtgatggagcttgaatccaaactgaatgaagctaaagaggaaattacc
ctgggaggccctgtcagtcagaagcgcgaccccaaagagtggattccacgcccaccagaa
aggtacgcgctgagtgggcaccgcaatccagtcacccgcgttatcttccatccagtcttc
agtgtcatggtgtcagcatctgaggatgccacaataaaggtttgggactatgaaacagga
gactttgaacgtacactgaaaggccacacagattcggtgcaggacatctcttttgaccag
actggcaaactgctggcatcctgctctgcagatatgactatcaaactgtgggacttccaa
ggctttgaatgcatcaggaccatgcatggacatgaccacaatgtttcatctgtagctatc
atgcccaatggagatcacattgtttctgcctcaagggacaaaaccataaaaatgtgggag
gttgcaactggctactgcgtgaagaccttcacaggccatagagagtgggtccgtatggtg
cggcctaaccaggatggcacactgattgccagctgttccaatgaccagacagtgcgggtg
tgggtcgtggcctcaaaagagtgcaaagctgaactgcgggagcatgaacatgtggtggaa
tgcatctcctgggcaccagagagtgcccaccccaccatcctagaggccacaggctctgag
tccaagaagagtggtaagccaggacccttcctgctgtctggctccagagacaaaaccatc
aagatgtgggatgtaagcactggaatgtgccttatgacactggttggccatgacaattgg
gtgcgtggaatcctcttccaccctggtggcaagtttattgtgagctgtgcagatgacaag
actctaaggatctgggactacaagaacaaacgctgcatgaaaaccctgtgtgcccacgaa
cactttgttacctctttggatttccacaaggctgctccctacgtcgtcacagggagcgta
gatcaaacagttaaagtgtgggagtgccgctga
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