Solea senegalensis (Senegalese sole): 122773351
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Entry
122773351 CDS
T07721
Symbol
ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03022
Basal transcription factors
ssen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122773351 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
122773351 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssen03021
]
122773351 (ercc2)
03036 Chromosome and associated proteins [BR:
ssen03036
]
122773351 (ercc2)
03400 DNA repair and recombination proteins [BR:
ssen03400
]
122773351 (ercc2)
Enzymes [BR:
ssen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122773351 (ercc2)
Transcription machinery [BR:
ssen03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122773351 (ercc2)
Chromosome and associated proteins [BR:
ssen03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
122773351 (ercc2)
DNA repair and recombination proteins [BR:
ssen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122773351 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
Motif
Other DBs
NCBI-GeneID:
122773351
NCBI-ProteinID:
XP_043887907
LinkDB
All DBs
Position
LG8:complement(10208001..10219488)
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNIDGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIIAYQ
RAFPLEVTKLIYCSRTVPEIEKVVEELRRLMEFYSKETGESNNFLALALSSRRNLCIHPE
VSALRFGKEVDGKCHSLTASYIRAQRHSDPNLPACRFYEEFDAVGRQVPLPAGIYNLDDL
KDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID
NVCIDSMSVNITRRTLDRCQTNVDTLQNTIQKIKETDAAKLKEEYRRLVEGLKEANVARE
TDVYLANPVLPDEILQEAIPGTIRTAEHFVGFLRRFLEYLKSRLRIQHVVQESAPQFLKD
IFDKVCIDRKPLRFCAERLQSLLRTLEIVDIADFSAVTLISNFATLVSTYSQGFTIIIEP
FEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVIITSGTLSPLDIYPRILDFRPVTIAS
FTMTLARTCLCPLIVGRGNDQVALSSRFETRDDIAVVRNYGNLLLEMSAIVPDGIVAFFT
SYVYMENIVASWYEQGILENIQRNKLIFIETPDAAETSMALEKFQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRALRGKTDYGLMIFADKRYARADKRGKLPRWIQEHINDGSLNLTVDEAVQLSKHF
LRQMAQPFRQEDQLGLSLLTLEQLESEEMLQKIAQIAHQT
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaacattgacggtctgttggtgtattttccatatgactacatctatcctgag
cagtactcctacatgctggagctaaaaaggacactggatgctaagggacatggagtgttg
gagatgccatcaggtacagggaagaccatctctctgctttctctcatcattgcctaccag
cgggcctttcctttagaagtgaccaagttaatttactgctccagaacagttcctgagatc
gagaaggttgtggaggagctgaggaggctgatggagttttattctaaggaaactggggaa
agcaacaacttcttggctctggccctttcctccaggagaaacctctgtatccaccctgag
gtgagtgctctgcgctttggtaaggaggttgatgggaaatgccacagtctgacagcatcg
tacattcgtgcacagcgtcacagcgaccccaacctgcctgcctgtcgtttctatgaggag
tttgatgcagtcgggcgacaggtgccactgcccgctggcatctacaaccttgacgacctg
aaggactttggcaggaggaaaggctggtgcccttactatctggctcgctactcgattctt
catgccaacattgtggtgtacagctaccattatcttctggaccccaaaatagctgacctg
gtatccaaagagctggccaaaaaatctgtagtggtgtttgatgaagctcataatattgac
aacgtttgtatcgactccatgagtgtgaacatcaccagacgaacactggaccggtgccag
accaacgtggacacactgcagaacaccatacagaagattaaagagacagatgctgctaaa
ctgaaggaggagtacaggcgactggtggaggggttgaaggaagccaatgttgccagagaa
acagacgtctacctcgcaaatccagtgttgccagatgaaattcttcaagaggcaatccct
ggtactattcgcacagccgagcactttgttggtttcttgaggcgtttcctggagtacctg
aagtcccgcctgaggatccaacatgttgtacaggagagcgccccacagttcctcaaagac
atttttgacaaagtctgcatcgaccgcaagcctctcaggttttgtgcagagaggttgcag
tcactactgcgaactctggagattgtcgacattgcagacttctcagctgttactctcatt
tccaactttgctaccctggtcagcacctacagccaaggttttaccataatcatcgagccc
tttgaagacagaactccgacaatcgcaaaccctgtgctacacttcagttgcatggaccca
tctatagccatcaaacctgtttttcagagatttcagtcagtcatcatcacctcagggact
ctgtctccactggacatctatccccgaatcctggactttcgccctgttaccatcgcatcc
ttcaccatgacactggcgcggacctgtctctgtcctctgattgttggaagaggaaatgac
caggtggccctgagctcaaggtttgagaccagagacgacattgctgtggttcgtaactat
ggcaacctactacttgagatgtctgccattgtccctgatggtattgtggcatttttcacc
agctatgtgtacatggagaacatagtggcgtcttggtatgaacagggtattctggaaaat
atccagagaaataagttgatcttcattgagactccggatgctgcagagacgagcatggcc
ctggaaaaattccaagaggcgtgtgaaaatggcagaggagccattcttctgtctgtggcc
agaggaaaagtgtctgaaggaatcgattttgtgcatcattttggccgagcagtcatcatg
tttggagtgccttatgtctacacacagagccgcatccttaaggctcgtctggagtacctt
cgggatcagtttcagatcagggaaaatgacttcctcacatttgacgccatgcgtcacgca
gcacagtgtgtgggcagagccctcagaggcaagaccgactatggactcatgatttttgct
gataagcgttacgcccgagcagacaaacgagggaagcttcctcgctggattcaggagcac
attaacgacggcagtctgaacctcacagtcgacgaggctgtccagctctccaagcacttc
ttgcggcagatggctcagcctttcagacaggaggaccagttgggcctgtctctgttgact
ctcgagcagctggagtcggaggagatgctgcagaaaatcgctcaaatcgctcatcagaca
tga
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