Solea senegalensis (Senegalese sole): 122773408
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Entry
122773408 CDS
T07721
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122773408 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122773408 (ddx6)
03036 Chromosome and associated proteins [BR:
ssen03036
]
122773408 (ddx6)
Enzymes [BR:
ssen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122773408 (ddx6)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122773408 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
122773408 (ddx6)
Chromosome and associated proteins [BR:
ssen03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122773408 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
122773408
NCBI-ProteinID:
XP_043888022
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All DBs
Position
LG8:7143731..7154378
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AA seq
480 aa
AA seq
DB search
MSTARTENPVILGLSNQNGQLRGSVKPAGAPGGGGGGPQLLNQMKGTINNGNSQPAPTTD
GVIKPGDDWKKSLKLPPKDTRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQ
EESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKRDCIQALVIVPTRELALQVSQI
CIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVNQVQMV
VLDEADKLLSQDFVVMMEDMLSFLPKQRQILLYSATFPLSVQKFMNAHLQKPYEINLMEE
LTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFY
IHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRIG
RSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPGIIDKSLYVAEYHSESGEEVKP
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggccaggacagagaacccagtgattttgggattgtcaaatcagaatggacag
ctcagaggctcggtgaagcctgctggagcaccaggtggaggtggaggaggcccacagcta
ctcaaccagatgaaaggcacaatcaacaatgggaattcccagccagcccccacaactgat
ggtgtcatcaagcctggagatgactggaagaaaagtttaaaattgcccccaaaggacacg
aggatgaaaacttcggatgtgactgcaacaaaaggcaacgagtttgaagattattgcctg
aagagggagctgctaatgggaatctttgagatgggctgggaaaagccatctccaattcag
gaggaaagcattcccattgcactgtcaggaagggatattttggctagagccaagaatggc
acgggaaagagtggagcctacctcattcccttacttgaacgcattgacctgaagagggac
tgcatacaagctttggtcatagtgcccaccagagaactggctctgcaagttagccaaata
tgcatccaggtcagcaaacacatgggtggagtgaaagtgatggcaaccacaggtggaacc
aacttgcgtgatgacattatgagactcgatgaaacagtacacgtggtcattgctacacct
gggaggattttagacctcatcaagaaaggagtggccaaagtcaatcaagtgcagatggtt
gttctggatgaagctgacaaactcttgtctcaggactttgttgtcatgatggaggatatg
ctgagtttcctgcccaaacagaggcagatcctgctttattctgcaaccttccctctcagt
gtccagaagtttatgaatgctcatttgcagaaaccctatgagatcaacttaatggaggag
cttacactgaagggtgtgactcagtattacgcttatgtaactgaaaggcaaaaagtccat
tgccttaacaccttgttctccaggctccaaatcaaccagtctataatcttctgcaactcc
tctcagagagtggagctccttgccaagaagatctcacagcttggttattcatgtttctac
attcatgccaagatgagacaggagcaccgcaaccgcgttttccacgatttcagaaacggc
ttgtgtcggaaccttgtctgcactgacctctttacaagaggaattgacattcaagctgtg
aatgttgtgatcaattttgactttcccaagcttggagaaacataccttcatcgcattggt
agatctggccgctttggacacttgggccttgccatcaacctcatcacctatgatgaccgc
ttcaacctgaaagggatcgaggagcagcttggaacagagatcaagcccatccctggcatc
atcgacaagagcttatatgtggcagagtaccacagtgagagtggtgaagaagtcaagcct
tga
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