Solea senegalensis (Senegalese sole): 122773448
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Entry
122773448 CDS
T07721
Symbol
hmgb1b
Name
(RefSeq) high mobility group protein B1b isoform X1
KO
K10802
high mobility group protein B1
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03410
Base excision repair
ssen04140
Autophagy - animal
ssen04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
122773448 (hmgb1b)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
122773448 (hmgb1b)
09143 Cell growth and death
04217 Necroptosis
122773448 (hmgb1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssen03036
]
122773448 (hmgb1b)
03400 DNA repair and recombination proteins [BR:
ssen03400
]
122773448 (hmgb1b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssen04147
]
122773448 (hmgb1b)
Chromosome and associated proteins [BR:
ssen03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
122773448 (hmgb1b)
DNA repair and recombination proteins [BR:
ssen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
122773448 (hmgb1b)
MMR (mismatch excision repair)
Other MMR factors
122773448 (hmgb1b)
Exosome [BR:
ssen04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
122773448 (hmgb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
122773448
NCBI-ProteinID:
XP_043888087
LinkDB
All DBs
Position
LG8:complement(4120380..4123996)
Genome browser
AA seq
248 aa
AA seq
DB search
MSNSRRRQRDKQRGGSLTTHPALTLLFLPLFDTYSRTAVASYSAVEKIKMVKDPKKPRGK
MSSYAYFVQTCREEHKKKHPEASVNFSEFSKRCSERWKTMSQKEKCKFEDMAKLDKVRYE
REMKTYIPPKGQKKKRFKDPNAPKRPPSAFFLFCADFRPKVKSEHPGLSIGDTAKKLGEM
WNGTAAEDKQPYERKAAKLKEKYDKDIVAYRTKGKVDSASAKAEEDDEEEEDEEGEEDDD
DDDDDDDE
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacagccggaggagacagagggataaacagagaggaggatcactcactactcac
cccgcactgacgctgctcttcctcccattgtttgacacgtacagtcgcacagccgtggcc
tcatatagcgctgtagagaaaatcaagatggtgaaggatccaaagaagccgaggggcaaa
atgtcctcgtacgcctactttgtgcagacatgtcgcgaagagcacaagaagaaacatccg
gaagcctctgtcaacttctcagagttctccaagagatgctctgagcggtggaagactatg
tcacaaaaggagaaatgcaagtttgaagacatggccaaactggataaggtgcgttatgag
agggaaatgaagacctatattccccccaagggccagaagaagaagcgcttcaaggacccc
aacgcccccaagagaccaccgtcggccttcttcctcttctgcgcagactttcgccccaag
gtcaaaagcgagcatcctggactctccatcggggacacggcaaagaagttgggagagatg
tggaacggcacagccgcagaggacaagcagccgtatgagcggaaagctgccaagctgaag
gagaaatacgacaaggatattgttgcataccgcacaaagggcaaagtggattcagcgtca
gctaaagcagaggaggacgatgaggaggaggaagacgaggagggagaggaggacgacgac
gatgacgacgatgacgatgacgagtag
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integrated database retrieval system
