Solea senegalensis (Senegalese sole): 122773516
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Entry
122773516 CDS
T07721
Symbol
hif1al
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha, like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen04137
Mitophagy - animal
ssen04140
Autophagy - animal
ssen04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
122773516 (hif1al)
04137 Mitophagy - animal
122773516 (hif1al)
04148 Efferocytosis
122773516 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssen03000
]
122773516 (hif1al)
Transcription factors [BR:
ssen03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
122773516 (hif1al)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1
PAS
PAS_9
PAS_4
Sld7_C
Motif
Other DBs
NCBI-GeneID:
122773516
NCBI-ProteinID:
XP_043888208
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Position
LG8:complement(9599448..9614482)
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AA seq
678 aa
AA seq
DB search
MEKKDGTVTTKRSSSEQRKLRSRDAARCRRSQETEVFYELARTLPLPRRVSTHLDKAAIM
RVTLSALRMRRLLRSAENKEEEEKEDTEDMEEEEEEEEEDQMDAFYPQALAGFLMVLTEE
GDMIYLTENVNKHIGITQLELLGQSVYDFVHPCDQEELRDMLTPRPGLNKKSAKEHLTER
NFFLRIKSTLTSRGRTVNIKSATWKVLHCSGHMRPFGSSSTLPLAARVMTLLCEPIPHPS
SVEFPLDTCTFLTRHSMDLRFTHCEGRVTELIGYKPDDLIGRSAYEFHHALDSDHVNKSL
HTLLTKGQVSTSHYRFLANSGGFVWAETQATVLYSNKTSQPEAIVCLNFILSAVEQPDVV
FSVEQLRCDRLMKAEPLSPAPPPTPEDLETPDSEGGHLTNFSQTEEVGSESSSAAKLLIK
QKEKPEELDLATEDKDAVKPPAGFVELSFISPKTLNLVPEQPQKLCTPELLQLLTPIFDP
ITPPPSASPVPSVDPVPNSSEDEEQMDTSEVEKFFATWQEDGQQQKKNLENMDEMDLEML
APYISMDDDFQLTFLSSLPEETNGPSSEPSVVSPAITLNRKRALVTDKDLSFLEKRPKQG
SLSTAEEILLSHKMLGCLEDTDQSDLILDLAPRGRSKLLTDRDPVLGGMQGLCDTAALMR
DVFIPRPPDLSAPLSPMT
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaaaagacgggacggtaacgaccaaacggagcagttctgagcagcggaagctg
cgttctcgtgatgcagccaggtgtaggcggagtcaagagacagaggtgttttatgagctt
gctcgtactcttccgctcccccgacgggtgtccacgcacctggacaaagccgccatcatg
agagtcaccctcagtgccctacgcatgcggcgcctcctgcgatccgctgagaataaggag
gaggaggagaaggaggatacagaggacatggaggaagaggaagaggaggaagaggaggat
caaatggatgctttctatcctcaggcattggcaggtttcctcatggttttaacagaggaa
ggagacatgatctacctgacagaaaatgtcaacaaacacattggcatcacacagctggag
ctgctgggtcagagtgtttacgactttgttcatccctgcgatcaagaggagctcagagac
atgttgactccacggccagggttgaataagaaatcagcaaaagaacatctgactgagaga
aacttcttcctgcgaataaaaagcaccctgaccagcagggggcgcacagtcaacatcaag
tctgcaacctggaaggttctccactgcagtggtcacatgcgtccttttggcagtagctcc
actctgccccttgctgccagagtgatgactttgttgtgtgagcccatccctcacccatcc
agtgttgagttccctctggatacatgcactttcctgacccgccacagtatggacctgcgg
ttcacacactgcgagggcagggtaacagagttgataggatacaaaccagatgatctaatt
ggtcgctcagcctatgagttccaccatgcactcgactctgatcacgtcaacaaaagtctg
cacacattgctgaccaaaggtcaggtgagcaccagccactaccgcttcctggcgaacagc
ggtggctttgtgtgggcagagactcaggcgactgtcctctacagcaacaagacgtcgcag
cccgaggccattgtctgcctaaacttcatcctcagtgctgtggagcagccagatgttgtt
ttctcggtcgagcagctccgttgtgaccgcctcatgaaagctgaacccctgtcaccggcg
cctccacctacaccagaggacctggagacccctgactcggaaggggggcatctcactaac
ttcagtcagaccgaggaggtgggttcagaatccagcagtgctgcaaagctcctcatcaaa
cagaaggagaaaccagaggagcttgacttggctactgaggataaagatgcagtcaaacca
ccagcaggctttgttgagctgtcattcatcagtccaaagactttgaacttggtgccggaa
caacctcagaaactatgcactccagagctgctacagctcctcacacccatctttgacccc
atcacaccaccaccatctgcatcaccagtcccctcagtggatcctgttcctaactccagt
gaggacgaggagcagatggacacaagtgaagtggagaagttctttgccacatggcaagaa
gatgggcaacagcaaaaaaaaaacctggagaacatggatgagatggatctggaaatgttg
gctccttacatctctatggacgacgatttccagcttaccttcctcagcagtttacctgag
gaaaccaatggcccttcttcagaaccttcagttgtgtctcctgctatcacactgaacagg
aaacgagctctggtcacagacaaggacctgtcgtttctggaaaagaggccaaaacaaggt
tctttgtcaacagcagaggaaattcttctcagccacaaaatgttgggctgtctggaggat
accgaccaatcagatttgatcttagacctcgccccaagagggcggagcaaactgctcaca
gacagagaccctgttttaggagggatgcagggactgtgtgatactgcagctctgatgagg
gacgtattcataccacgcccccctgacctgtctgcacctctctcgcccatgacttga
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