Solea senegalensis (Senegalese sole): 122773641
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Entry
122773641 CDS
T07721
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen04382
Cornified envelope formation
ssen04510
Focal adhesion
ssen04512
ECM-receptor interaction
ssen04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122773641 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122773641 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122773641 (col4a3)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122773641 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssen04147
]
122773641 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
ssen00536
]
122773641 (col4a3)
Exosome [BR:
ssen04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122773641 (col4a3)
Glycosaminoglycan binding proteins [BR:
ssen00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122773641 (col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122773641
NCBI-ProteinID:
XP_043888389
LinkDB
All DBs
Position
LG8:complement(11059456..11099500)
Genome browser
AA seq
1675 aa
AA seq
DB search
MSECMERPGTQRRGIKPLQLLLPLVVVVLYCTPGDTKTACHCNGKALCHCDGVKGQKGEP
GYGGESGLPGMIGYPGNEGPHGFSGEKGEQGAAGPSGPKGSRGLSGKPGYPGPPGLPGLP
GSEGPIGQPGFPGCNGTKGDVGYPGFPGPLGPVGLPGLPGLQGTKGDSFVYPIPPDIKGQ
MGKQGLKGREGLRGDPGQLGPSGPPGPAGSPGIPGFPGSPGEKGQEGPNPVILGPRGQKG
DRGLPGIPGQKGIKLYAEGPKELKGEPGEKGEKGCHGLPGVAGKVGRKGEKGEQGDPGTF
GKQGKDGLIGALGIPGDTGDVGYLGPPGIEGTQGEKGERGPPGLPGETIWNHRFLKGQRG
VPGVRGPPGAPGEQGIIGFPGMQGETAATPAGPPGAQGPPGLTGPKGEPGEPGSLMYGTP
GVTGIPGALGAKGEPGEPGIPDFLPGDVGATGDKGTKGLIGLPGTRGDEGQMGEKGETCF
VCAEGSGSPGPPGKPGEPGEPGLPGSDGFPGPIGDKGVKGVRGSPGPQGPFGFPGIPGSP
GPAGKPGIMNRVGEKGEEGAQGGPGPVGFEGTNGPVGIPGPKGVQGQKGNPGPPGQKGDR
GPLGEYGPSGLIGQRGPPGPPGIGVPGPPGPKGNIGVLGQRGSPGIPGEKGSPGEIKTSP
GDPGQKGEKGLPGNPGPEGVTGLPGDLGPVGPKGEKGNEGFSVQGPPGFPGVKGVKGPPG
APGLSSFGIKGRAGPSGPPGMPGPKGDRGIGLPGQQGQSGPPGEDGSVGSQGNPGPQGPE
GVPGLPGQDGPPGPRGSSGLDGVPGPTGVTGLCLDGAPGPKGEEGQIGSIGFPGVCGSKG
VQGDSGLPGVGPLGPPGPYGTPGLNGLPGPEGGFGLKGLRGTDGKPGFPGIKGDMGPPGP
LGCAGNDGKPGEPGRVGPKGEMGIDGIRGSQGPPGPQGDQGERGPPGLETSVTMCGDPGD
DGNPGRLGLTGAKGDRGIPGPQGLDGSNGVPGEAGPQGLPGDPPRDGEIGPLGLTGLPGY
PGEMGRPGLKGEKGSLGPSGEAGSDGTPGSGGPKGAKGEPSLPGLGIKGYTGQKGNSGCS
GPLGSKGRTGDPGNIGSPGEYGPCGPKGYYGPVGCRGPPGPVGEKGSDGPPGKTGPPGPT
GLQGNKGAPGDPGLPGLRGNQGQDGIPGPPGEKGAMGAPGFGPRGPEGQQGQPGSVGDQG
LPGTCGPPGPSGPGGNAGYPGPPGPTGPPGSPGPEGLCTAGEKGDHGVSGAQGPKGPPGC
KGPPGPPGPGYKGDKGSIGAIGNPGPTGYPGDPGLQGQPGKDGTPGLPGPKGKMGETGVI
GPFGLKGDAGPQGDAGFQGPPGLPGSQGLRGMDASREVRMVPGDEGLPGVQGPPGERGPP
GASGRPGCPGVKGSKGQVGIRGPGGRPGPKGDQGDQGLPGTKGIPGTCGLLGAKGLPGPP
GPSGDAPERDGFLFTRHSQNLFIPSCPAGSSQVYSGYSLLFINGNNRAHGQDLGTLGSCL
PRFTTMPFLFCNTDNTCRYASRNDYSYWLSTNETLPGSVPFITEDLLESYISRCIVCEAR
ANVITVHSQTNFVPSCPSGWDRLWLGYSFVMETGVGAEGSGQPLASPGSCLEFFRKIPFI
ECHGRGSCNYYTDSYSYWLAALNPSDMFSKPKPQTVKGEFPDSLISRCQVCMKRL
NT seq
5028 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagtgtatggagcgcccgggcacccagcggcgggggatcaaacctctacagctg
ctgcttccgctggtggtggtggtgctctactgcactccaggagacaccaagacagcgtgt
cactgcaatgggaaggcgttgtgtcactgtgatggggtcaaaggtcaaaagggtgaacct
ggttacggtggagaaagtggacttcctggaatgattggttaccctggaaatgagggtccc
catgggttttccggagagaagggtgagcagggagcagcaggaccttcaggaccgaaaggc
tctcggggtctttcaggaaaacctggatatccaggacctccaggactgccgggacttcct
ggaagtgaaggacccattggacaaccaggattcccaggatgcaatgggacaaagggcgat
gttggttacccagggttccctggacctctgggacctgttggccttcctggtctgccagga
ctgcagggtacaaagggagactcgttcgtctaccccattcctccggatattaaaggacaa
atgggaaaacaaggactgaaaggacgagagggactgaggggagatccaggtcaactcggc
ccttcaggaccaccaggacctgcaggaagtcctggaattccagggtttccggggtcacca
ggagagaaaggtcaggagggtcccaatcccgtgattctaggtcctcgaggacagaagggt
gatcgtggacttccagggatccctggacagaaaggaatcaaactgtatgctgaaggaccc
aaagagctgaagggagaacctggtgaaaaaggagaaaagggttgccatgggcttcctggt
gtcgctgggaaagttggaaggaagggagagaagggtgaacaaggcgacccaggcacattt
ggtaaacaaggaaaggacggactcatcggagcgcttggaattccaggagacacaggggat
gttgggtaccttgggcctcctggcattgaaggaacccagggggagaaaggtgaacgtggt
cctccaggtcttccaggagagactatctggaatcacaggtttctgaagggtcagcgtggt
gtccctggggtccgtggccccccaggagcccctggagaacaaggaatcattggttttcct
ggaatgcagggtgagacagcagcgactcctgctggacctccaggagctcaggggccccca
ggccttacagggcccaaaggagaaccaggagagccagggtccctcatgtacggcacccca
ggggtgacaggaataccaggggctcttggagctaaaggagaaccaggagaaccgggaata
ccagattttctgccgggagatgtcggtgctacaggagataaaggtacaaaaggactgatt
ggacttcccgggaccagaggggacgaggggcagatgggtgaaaaaggagagacttgcttc
gtttgtgctgaggggtccggctcccccggacctccgggtaaaccaggagagccaggtgaa
cctgggctgccagggtccgacggttttccaggaccaataggtgacaaaggggtcaaaggt
gtccgaggatcacctggtccacagggcccctttggtttccctggcatcccagggtcccca
ggacctgcaggtaaaccagggatcatgaacagagtaggagaaaagggtgaggaaggagcg
caggggggaccaggaccagtgggtttcgagggtacaaatggacctgtaggtataccggga
ccaaaaggtgttcaaggacagaaaggaaaccctgggcctccaggacagaaaggtgacagg
ggcccacttggggagtatggtcctagtgggctgataggacagaggggacccccaggacct
cctggtattggtgttccagggcctccaggacctaaaggcaacataggggtcctgggccag
agaggaagtcctggaataccaggtgagaaaggttctcccggagaaatcaagacatctcca
ggagatccaggacaaaaaggagagaaaggtttacctggaaatccgggacctgaaggtgtg
acaggacttcctggtgatctaggacctgttggtcctaagggagaaaaaggaaatgaaggg
ttttctgtgcaggggcccccaggcttcccaggggtcaaaggagtgaaaggtcctccagga
gctccaggtttatcaagttttggtatcaagggacgtgcagggccgtcagggccaccgggg
atgccagggcctaagggagatagaggtatcggcctgccaggacagcagggtcagtctggc
cctccgggagaagatggttctgtggggtctcaaggaaatcctggacctcagggaccagag
ggagttccagggcttccgggacaagacggaccaccgggacccagaggttctagtggtcta
gacggtgtccctggcccaactggcgttactggactctgtttagatggggctcctggacca
aagggagaggaaggacagattggctccattggcttcccaggggtctgtggctcaaagggg
gtgcagggtgattctggactgccaggtgtgggacccctgggtcctccagggccatatggg
actccagggcttaatggacttcctggaccagaaggaggctttggactgaaaggcctgagg
gggactgatgggaagccaggattcccaggcatcaaaggtgacatgggtccgcctggaccg
cttgggtgtgcggggaatgatggcaaaccaggagagccaggacgagtaggaccaaaaggt
gagatgggcatagatgggatcagaggttctcagggccctccagggcctcagggggaccaa
ggggagaggggacctccaggcctcgaaacttctgtaacgatgtgtggagatcctggagat
gacggaaatccagggcgcctaggacttactggcgctaaaggagacaggggcatccctgga
cctcaaggacttgacggcagcaatggcgtacctggagaagctgggccacaaggacttcct
ggagacccccccagagatggggaaataggtcctcttggtctcaccggtctccctgggtac
ccaggggaaatgggcaggccaggattaaagggtgagaaaggctctttgggcccttctggt
gaagctggttcagatggtacaccagggtcaggaggaccaaaaggtgctaaaggagaacca
agtctacctggacttggaataaaaggatatactggacagaagggaaattcaggatgttcg
ggacctttaggttcaaagggaagaacaggagaccctgggaacattggttctccaggagaa
tatggcccttgtggccccaaaggatactatggtccagtgggatgcagaggtcctccagga
cctgtgggtgaaaagggtagtgatggtccaccagggaaaacaggccctccaggacccaca
ggactacaaggcaataagggggctcctggagaccctggtctaccgggtctcagaggaaac
cagggacaagatgggatacctggacctccaggagagaaaggagccatgggagctcctgga
tttggtccccggggcccagaggggcagcaaggtcaacctggctctgtcggagatcagggt
cttcctgggacctgtggacctcccggtcctagtggtcctgggggaaatgcaggttatcct
ggtcctcctggacccactggtcctcctggctctcctggacccgagggactctgcactgca
ggagaaaaaggagatcacggggtctctggagcacaaggaccaaaaggtccccctggctgt
aagggacctcctggtcctcccggtcctggttataaaggagacaagggaagtataggagca
ataggtaacccaggaccaactggttaccctggcgaccctggtctacagggccagccgggt
aaagacggaaccccgggtctacctggacccaaaggcaagatgggagagactggtgtcatt
ggaccttttggtttgaagggggatgcggggccccaaggtgatgctggctttcaaggacct
ccaggactacctgggagtcaaggactcaggggtatggatgcatccagagaggtgaggatg
gttccaggagatgaaggcttgcctggagttcagggacccccaggagagagaggaccccca
ggggccagtgggagaccaggatgtccaggtgtgaagggcagtaaaggtcaggtgggtatc
agaggaccaggtggacgccctggacctaaaggggatcagggagaccaaggacttcctgga
acaaaaggtatcccaggcacatgtggtctcctcggtgccaaaggtcttccgggtccaccg
ggtccaagtggggatgcaccagagagggatggcttcctgttcaccagacacagccagaac
ctgttcatcccatcatgccctgcaggatccagtcaggtgtacagcggatactcgctgctg
ttcatcaacggaaacaaccgagcgcacggacaagacctgggtacgttaggcagctgtctc
cctcgcttcaccaccatgcccttcctgttctgcaacactgacaatacctgtcgctatgcg
tcacgcaacgattactcctattggctgtccaccaatgaaacactaccaggcagcgtcccc
ttcatcaccgaagatttactggagagttacatcagcaggtgtattgtatgtgaggccaga
gccaacgtgatcaccgtccacagtcagaccaattttgtcccgagctgtccctctggatgg
gatcgtctttggttgggatactcctttgtgatggaaacaggagtgggggctgaggggtca
gggcagcctctggcttcacctggatcttgtctggaattcttcaggaagattcccttcatt
gagtgtcatggcagaggatcctgcaactactacactgactcatacagctactggctggct
gctctcaaccccagcgacatgttcagtaaacccaagcctcagactgttaaaggagagttt
ccagacagtttgatcagccgctgtcaagtgtgtatgaagaggctgtga
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