Solea senegalensis (Senegalese sole): 122773642
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Entry
122773642 CDS
T07721
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen04382
Cornified envelope formation
ssen04510
Focal adhesion
ssen04512
ECM-receptor interaction
ssen04518
Integrin signaling
ssen04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122773642 (col4a4)
04518 Integrin signaling
122773642 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122773642 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122773642 (col4a4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122773642 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssen04147
]
122773642 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
ssen00536
]
122773642 (col4a4)
Exosome [BR:
ssen04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122773642 (col4a4)
Glycosaminoglycan binding proteins [BR:
ssen00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122773642 (col4a4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122773642
NCBI-ProteinID:
XP_043888390
LinkDB
All DBs
Position
LG8:11086844..11117802
Genome browser
AA seq
1664 aa
AA seq
DB search
MLATSVFTAPCSYTWLWCLLMILTHPPSALGGDQMELCAGRDCSTCQCFPAKGARGAPGG
LGQQGNQGPPGFPGPQGPPGEKGHRGDEGFTGAQGMKGDMGSVGVLGFPGLEGVPGHPGP
AGGPGFPGLDGCNGTRGQRGEPGLPGEQGPDGEVGFPGLKGFRGDPSVYFKQYPGIPGDD
GLSGIPGLQGEQGRPGPMGRVGLAGLDGTNGLPGLPGPRGPPGEEGRSIPGQKGEEGDQG
LQGPPGPFEYVDPPEDSYLKGEQGRRGVKGACGPPGRLGQDSFPGIKGEKGLLGFPGTRG
DFGNSGLPGEKGFKGIRGSPGLPGLIGREGLKGVMGDLGPKGLTQETEVSHTGEDGDPGP
PGPSGPPGDMGLMGMHGPPGAPGRSIPGPPGFAGKSGVPGSKGERGDPGLVIKDGPTPGE
PGKPGRPGPRGMKGEPGIPGRYCIAGTTGEAGEQGQQGPPGALGFPGLKGSHGDCSCGCP
RTLSGPLGPEGDPGHPGFPGVPGTLGQIGEKGLPGDVGEIGQQGFGGFPGVKGFKGQKGD
FIVVDTKGEKGNRGQLGPPGRQGLSGRRGPNGLPGAPGEPGPQGVSFSSFPGDRGFPGFS
GPKGLLGSPGSPGIGIIGALGERGPPGDPGLPGIQGAPGPKGTNGDTLPCVPRNPGPPGQ
KGDTGNSGYAGHPGPSGFQGTTGPDGIKGNQGQSGLPGLPGRQGPQGFVGDTGDEGLEGF
SYGGEPGTPGIPGSPGLRGPAGESDVGPSGPIGFPGPLGSPGSKGVPGPPGSDGLQGALG
LSGGPGLKGQRGQDGAPGISGPLGSSPNSCDAGKPGSRGALGPRGPIGPPGFQGEKGEIG
AVGPPGFGLEGPVGKLGPPGFPGSPGPQGKTGPSGDPGQPGTVGEKGLLGPQGKYGGPGP
LGQTGFPGTPGKTGERGFNGRDGAPGCEGPKGEKGRRGKPGPPGLTRYIPIKGEKGKQGA
PSISGFPGSRGSKGVLGPTGNPGFPGLSGPTGITGPPGKPGSCGIPGPPGLPGRQGPPGP
MGFPGEIGDPGDVGRPGKSGEPGREGCTGQKGDKGDSVSSPGLPGDKGAPGDFGQSGPRG
PYGDPGVPGFIGDPGQNGRKGDPGHHGDPGLPGAIGPRGPRGRPGFPGIPGKAGNNGPPG
PQGDIGLQGPPGPLGLHGLDGLKGVKGDMGTRGLAVTGPPGLIGLPGKKGPQGLQGPCGT
SQPGRQGLKGPPGPKGPPGSYGPPGQTGPNCEDPVLGPPGDPGCLGPDGDPGCPGDMGDP
GTNPPVPGDEGDNGNMGYLGAVGLKGQTGPRGLPGITGDCGVKGKKGSQGLMGPPGNKGP
RGSPGSPGPIGPKGLEGPMGPKGEKGGLAPFPIYPPSQQGPPGPPGPPGALGEAGVIGES
GQTGHKGLKGDPGSEGPRGFMGLPGPDGDQGAPGLPGMTGTVGGEGGSGPIGDRGPPGRS
TRLNPGFLLVMHSQSRQIPTCPLNMRALWSGYSLLYLEGQEKAHTQDLGRAGSCMRIFST
MPFSSCNIGACSYASRNDKSYWLSTTAALPSIPVDGPSIEEHISRCVVCESPSLPVALHS
QTSKQPDCPPNWTSLWTGFSFLMHTGAGDEGGGQSLTSSGSCLTDFRTQPFVECQGPRGT
CHYFANIYSFWLTRVDTSISTTTTLTDAWQQRSNIGRCNVCMRL
NT seq
4995 nt
NT seq
+upstream
nt +downstream
nt
atgctggcaacttccgtcttcaccgccccctgcagctacacctggctctggtgtctcctg
atgatcctgacgcatcctccatcagctctcgggggagaccagatggagttgtgtgctggg
cgggactgctccacctgtcagtgtttcccggccaaaggagcaaggggggcaccaggtggt
ctgggacaacagggaaatcaggggcccccaggcttcccaggtcctcagggacctccagga
gaaaagggccacagaggagacgaggggttcactggagcccaaggaatgaaaggagacatg
ggaagtgttggtgttcttggatttccgggtttagagggagttccgggtcacccgggtccg
gctggaggtcctggttttccaggtctggatgggtgtaatgggaccagaggacagagggga
gagcctggacttcctggagaacaaggaccagatggagaagtgggttttccaggcctgaag
gggtttcgaggagatccgtcagtttacttcaaacagtatcctggaatacctggagatgat
gggctcagtggaataccaggactacagggtgaacagggacgtcctggcccaatgggacgt
gtgggtctagcaggactggatgggaccaatggtctccctggtctccctggtcccaggggc
ccacctggagaagaaggtcgatctatacctggacagaaaggagaagagggtgatcagggc
ctccaggggccaccggggccctttgaatatgtcgaccctcctgaagactcatacctcaaa
ggagagcagggtcgtcgaggggtcaaaggagcttgcggaccaccgggacgtttgggtcag
gacagtttccctggaatcaaaggagagaaagggcttctgggattccctgggacgcgggga
gattttggtaattccggtctgcctggagaaaaaggttttaaggggattcgaggaagccca
ggtctgcctggtctgattggacgagaaggtcttaagggcgtgatgggagatctgggacct
aaaggcctcactcaagagacagaagtctcacacacaggtgaagacggggaccccgggcca
cctggacccagtggccctccaggtgacatggggctgatgggaatgcacggacccccagga
gcccctggcagatcaatacctggtccaccagggtttgcggggaagagtggagttccagga
tccaagggggaaagaggagatccaggtctggtgattaaagatggacccacacctggagaa
cctggaaaaccaggccgccctggacctagaggaatgaaaggagagccagggattccaggt
cgttactgtattgctggaaccacaggagaagctggagaacaaggtcaacaaggacctccg
ggggctctgggcttcccagggctcaaaggctctcatggtgactgttcctgtggctgtcct
cgtacactaagtggccccctcgggcctgaaggggacccgggccacccagggtttcctgga
gtcccgggaacactagggcagataggagagaaaggtttacctggtgatgttggagaaatt
ggacaacagggttttggggggtttccgggtgttaaagggttcaaaggtcagaagggagat
ttcattgtggtggacacgaaaggtgagaagggaaaccggggccagctaggtccacccggc
agacaaggactctccggtagaagaggacctaatgggctcccaggggcccctggagagcct
ggtccccagggagtcagttttagcagttttcctggggacagaggcttccctggattttca
ggtccaaagggattattaggatctccaggttctcctggaattggtatcatcggtgctctt
ggagagcgtgggccccctggtgacccaggacttccaggaatccagggtgcccctgggcca
aaggggaccaatggtgacactctgccctgtgtacccagaaaccctgggccccctggacag
aagggagacacaggaaattcaggttatgcaggacacccgggaccttctggttttcaaggc
accactggacctgatggtattaaaggaaaccaaggacagtctggacttcctggactacct
ggacgacaaggacctcaaggctttgttggagatactggagatgaaggccttgaaggattc
agttatggtggagaaccaggaactcctgggatcccaggctcccctggacttaggggccca
gcaggggaatctgatgttggtccttctggacctatcggcttcccaggaccactgggttct
ccaggatctaagggggtccctggcccccctggcagtgatggactacaaggagccctgggt
ctgtccgggggccctggactaaagggccaaagaggacaggatggagcaccggggataagt
ggtcccctaggttcctcacctaactcatgtgatgcaggaaaaccaggttctaggggtgcc
cttggtcctcggggaccaataggacccccaggctttcaaggggaaaagggtgagattggg
gcagtgggtcctccaggttttggccttgaaggtcctgtaggtaaactaggccctccaggt
tttccagggtccccagggccccagggcaaaactggccccagtggagacccgggacagcct
gggactgttggtgagaaaggtctgttggggccccaaggcaagtatggcgggccagggccc
ctaggacagactgggttccctggaactccagggaagacaggagagagagggtttaatgga
cgagatggagctccaggatgtgaagggcctaaaggagagaaaggtagaagagggaaacca
ggacctccgggattgaccaggtacattcctatcaaaggagagaaaggaaaacaaggagcc
cccagtatcagcggcttccctggatcacgaggaagcaaaggtgttctgggacctacaggt
aatccagggtttccaggactcagtggacccacgggcatcacaggcccccctgggaaacca
ggttcctgtggtatcccaggaccaccagggttaccaggacgtcaaggacctccaggaccc
atgggcttccctggagagataggagatccaggtgacgtgggaaggccaggaaaatctggc
gaaccaggccgtgaaggatgtactgggcagaaaggtgataaaggagactctgttagttct
cctggcctacctggagacaaaggggctcctggagactttgggcaatcaggacctcgtgga
ccttatggagatcctggagtacctggtttcattggggatccaggacagaatggacgaaaa
ggagatccaggtcaccatggagacccaggtctaccaggtgcgattggtccccgaggtccc
agaggtcgtccaggttttccagggattcctggcaaagcgggtaacaatggtcctcctgga
cctcaaggtgacataggtctccaaggtccacctggaccactgggacttcatggactagat
ggactgaaaggagtgaaaggggacatggggaccagaggtctggctgtgacaggtcctccg
ggtctgattggccttccagggaagaagggtcctcaaggtcttcaaggtccctgtggtact
agtcagcctggacgacagggactcaaaggccccccaggacccaaaggacctccagggagt
tatggacctccaggtcaaactggaccaaactgtgaagacccagtcctaggccctcctgga
gatcctggatgtcttggacccgatggagacccaggttgtcccggggacatgggagatcct
ggtacaaatcctccagttcctggggatgaaggagacaatggaaacatgggttacttgggg
gcagtgggtctaaagggacaaacaggtcctagaggattgcctggcatcactggagactgt
ggagtaaaaggtaagaaggggtcccagggtttgatgggaccacctggaaataagggtcca
agaggttcccctggctccccagggcctataggacctaaaggacttgagggaccaatgggt
ccaaagggagaaaagggaggacttgccccctttcctatttatcctccttctcaacagggc
cccccaggtcctcctggcccccctggagcacttggagaggctggtgtcattggagaatct
ggccagacaggacacaaaggtttgaagggggatcccgggtctgagggaccaagaggattt
atggggctcccaggtccagatggagaccagggagcgccaggcctgccgggaatgactgga
acagtgggaggcgaaggtggttctgggccaataggagaccgcggtcctcctggacggtca
actcgcctgaatccagggttcctcttggtaatgcacagccaatcaaggcagattcccacc
tgtccactaaacatgagggccctatggagtggatatagtctgctgtacctggagggacag
gagaaggcacacactcaggatctgggtcgggctggctcatgtatgcgcatcttctcaacc
atgcccttctcctcctgtaacattggtgcctgctcttacgcaagtcgtaatgacaaatcc
tattggctgtccacaacagcagcccttcccagcattcctgtggacgggccctctattgaa
gagcacatcagccgatgtgtggtgtgcgaatctccctctttacctgttgcactgcacagc
cagacgtccaaacagcctgactgcccccccaactggacaagcctgtggactggattctct
ttcctcatgcatacaggagcaggtgatgagggcggtggtcagtctctgacctcatctggt
agctgtctgacagacttcaggacccagccctttgtggagtgtcaggggccacgaggaacc
tgccactactttgccaacatttatagcttctggctaaccagagtggacaccagcatctcc
accaccaccacactgacagatgcatggcaacagagaagtaatattgggaggtgcaatgtc
tgcatgaggttgtga
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integrated database retrieval system
