Solea senegalensis (Senegalese sole): 122773856
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Entry
122773856 CDS
T07721
Symbol
acin1a
Name
(RefSeq) calponin homology domain-containing protein DDB_G0272472 isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03013
Nucleocytoplasmic transport
ssen03015
mRNA surveillance pathway
ssen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122773856 (acin1a)
09122 Translation
03013 Nucleocytoplasmic transport
122773856 (acin1a)
03015 mRNA surveillance pathway
122773856 (acin1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122773856 (acin1a)
03041 Spliceosome [BR:
ssen03041
]
122773856 (acin1a)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122773856 (acin1a)
Spliceosome [BR:
ssen03041
]
Complex C
Other components
EJC/TREX
122773856 (acin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAP
HeH
Motif
Other DBs
NCBI-GeneID:
122773856
NCBI-ProteinID:
XP_043888761
LinkDB
All DBs
Position
LG1:6497566..6504360
Genome browser
AA seq
1230 aa
AA seq
DB search
MADLEDVTLDGRPLQSLRVADLKAALEERGLSKSGQKNALVKRLKGALMLENLQRTSTAH
IGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAFETNDQEAHAEVNNSTSCP
PQAQQDVTPASAEQHKPPGPSGAGNEVEGNRNEEADMSGPPASGSVAMRVSGGEHRPERG
STSSEVAADSDDEDSEDGEEDADDDDWDSNARRRSLREPARAPTTRERSGASCQPQQQHI
PSLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPDVAPGRRSSSTSSSGSSSSGSRSS
SPEPQRSGPAERKPGPLTLLARKMESEGAFSGAGWHGGDGEGDRQGSGSPSGASFPARGP
LEGLVSAITHTTNTAGNVPSPMNPGTYKTIIGGHPAHSQVHVRILKSTVTGEKGSEAVRE
AAFELERQEKQRKLDQERAIELERERALALEREEKQRALEKEMLEHQQALEREEQEKALQ
REREKQERELALEQERQERELALERERQERELALERERQERELALAKEREEREQALARER
ALELERQKELERQRALEQERLQRESEEREKQERLQREREEREKQERLQREREEREKAMEL
ERAKALERERALEQERLDRERALEAERKEKERKERELALEQERLKREKLEREKALEEERI
KREKALEQERLERERALEQERLERERVLEQEKLERERALEQERLEKEEALERERIMREKA
IERERLEREKALAQERLEKERALEQERLEREKAIEQERLERKEKERVERERLDQERRERE
KALELEREEKERAEMEAALEKERVEREAALEKERVERVAALEKERVERERVEKEERERLD
REKALEQERLEMERALDKERKEKERALEEERERLIKEKAMQKEEQEKALVLEHKPELVAK
KEKESCLPPAKRGCKIDLAPLPTTSLLSTGPARKSSAEAREQEDVHSPMSRTETQAAETG
APTSPTPLSPQSSFKKFRLRDSPLQPQSSSIVIKRPRSFSDTPQPQPSPLVSPISVGEQQ
QKGHQPTAKQEAPQVQTKLEAVISPGSPGIQSEEMTSSKEQADPVKTEHAVKDSTKKIKV
DESKSILTPLDVTQREGRSVKKEEKMIRQRSSSSDSSSSDSDSSSSRSSRSSASSQEETS
SISRGRGAGKSGRDSSPQHRIIKEIGGEKIPKASPRKRQRSGDDVHATAGDHVKKSFTES
STQEETQRKRKDSEREEEKDKQRSGFQSFT
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgtaacgctggacgggagaccgctccagtcccttcgagtagcg
gatttaaaggctgctttagaggagagaggactctctaaaagcggtcagaagaatgcactc
gtcaaaagactcaagggggctctcatgttggagaatctgcaaaggacctccacagctcac
attggattgcagccaaactctcagattggtgaggaaatgagccagaacagctttatcaag
cagtatctggctaaacaacaggagctcctgaggcagcgtctggagagggaagctcgcgaa
gcatttgaaacaaatgaccaagaggcccatgcagaagttaacaatagcacctcatgtcct
cctcaagcacagcaggatgttacaccagcatcggctgagcagcataagccaccaggcccc
tctggtgcagggaatgaggtagagggtaataggaatgaggaagctgacatgtctggtcct
cctgcatctggctctgtggccatgcgtgtgtctggtggtgaacacaggccagagcgaggt
tctacatccagcgaagttgcagctgacagtgacgacgaggacagtgaggatggagaggag
gatgctgacgacgatgactgggatagcaatgctcgaaggagaagtctcagagagccagcc
agagcacccacaaccagagagaggtctggagcatcctgtcaaccccagcagcaacacatc
ccttcccttttgtcgcctcagctacgccaacctacaccccccccttccccacctccagag
ttgtcatttcccttgcctgacacccctaaacagagtccccctagtccagatgtagcccca
ggtagacgttcatccagtacctccagctctggttcatccagcagtggcagccgcagtagc
agcccagagccacagaggagtggaccagctgagcgcaaacctggcccactgaccttactg
gcacgtaaaatggaatcggagggtgctttctctggtgcaggttggcatggcggtgatggg
gaaggtgataggcagggtagtggttcaccttcaggtgcatcgtttcctgccagagggcct
ttagagggtctagtatctgccatcactcacacaaccaacactgcaggcaatgtgcccagt
cctatgaacccaggcacatacaagactatcataggaggacatccagcccatagtcaagta
catgtgagaatactcaagtccactgtaacgggagagaaggggtctgaagcagttagagaa
gcagcatttgagctggaaaggcaagagaaacagagaaaacttgaccaggaacgagcaata
gagttggagcgggaaagagctcttgcactggaacgtgaggaaaagcagagagctttggag
aaagagatgctagagcatcagcaggccttagaaagagaagaacaggaaaaggccttacag
agggagcgagaaaagcaggagagggaactagctcttgagcaagagagacaggagagagaa
ctagctcttgaacgagagaggcaggagagggaactagctcttgaacgagagaggcaggag
agggaactagctttggcaaaagagagggaggagcgagaacaagccttagcacgagagagg
gccctggagctggagagacagaaagagctggagagacagagggctttggagcaagagcgt
ttgcaaagagaaagcgaggagagggagaagcaagaacgtttgcaaagagaaagagaggag
agggagaagcaagaacgtttgcaaagagaaagagaggagagggaaaaggcaatggagcta
gaacgagcaaaggctttggagagagaacgggctcttgagcaagagaggttggacagggaa
agagctttagaggctgagagaaaggagaaggaaaggaaggaaagagagttggctttggaa
caggagaggctgaaaagggagaagttggagagggaaaaagccttagaagaagagagaata
aagagggagaaagctcttgagcaagagagactagaaagggagagagccttggagcaagag
agactagagagggagagagtcttggagcaagagaaactagaaagggagagagccttggag
caagagagactagagaaagaagaagcgttagaacgggagagaattatgagagagaaagcc
atagagcgagagagactagaaagagaaaaggccttagcacaagaaaggttggagaaggag
agagccctagagcaagagagactggagagggagaaagcgatagagcaagagaggctggag
aggaaagaaaaagaaagagttgaaagagaaagattagaccaagagaggagagagagggaa
aaggccttggaacttgaaagggaggaaaaagagagagcagagatggaggcagctctggaa
aaggagagggttgagagggaggcagctctggaaaaggagagggttgagagggtggcggct
ctggaaaaggagagggttgagagagaaagagttgaaaaggaggagagggaaagactagac
agggagaaagctttagaacaggagagacttgaaatggagagagccttagacaaggagagg
aaggagaaagagagagccctggaagaagagagggaaagattaatcaaagaaaaagccatg
cagaaagaggaacaggagaaggcccttgtattggagcacaagcctgagttggtggctaaa
aaggagaaggagagttgcctccctccagccaagcgtggttgcaagattgatctcgcaccc
ctgcccactacttccctcctctccacaggaccagctagaaaatcttcggctgaggcaaga
gagcaggaagatgtccattctccaatgtcccggactgaaacacaagcagcagagactggt
gcacccacatcaccgactcccctgtctcctcagtcttcatttaagaagttccgcttaaga
gactcgccacttcagccccagtcttcctcaattgttatcaagcgacctcgtagcttctct
gatacccctcagcctcaaccctcgcctttagtctcccccatcagtgttggagaacaacag
cagaaaggacaccagcccactgctaaacaggaagcgccacaggtgcagacaaaactggag
gctgtaatatcaccaggatcacctggaatccagtctgaggagatgacctcttccaaagag
caggcagatccagtgaagactgagcatgctgtaaaggattccaccaaaaaaataaaagtg
gatgaaagcaagagtattttaaccccattggatgtgacacaacgggagggcagaagtgtg
aagaaggaagagaaaatgataagacaaagatcatcgtctagtgattcctcttcctcagac
tctgactcttcatcatctaggtcttcaaggtcatctgcttcttctcaagaagaaacatcc
tccatctccagaggtagaggggcgggaaaatctggaagagattcctcaccacagcacagg
ataataaaagagattggaggagaaaaaatcccaaaagcctctcctcgcaaaagacagagg
tctggagatgatgttcacgcaactgctggtgatcatgtcaagaaatcattcactgaatct
tcaacccaagaggagacacaaaggaaaagaaaggacagtgagagagaagaggaaaaggat
aaacaaaggtctggttttcagtcttttacttga
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