Solea senegalensis (Senegalese sole): 122774015
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Entry
122774015 CDS
T07721
Symbol
pan3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122774015 (pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122774015 (pan3)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122774015 (pan3)
mRNA degradation factors
3'-5' decay
Pan complex
122774015 (pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf-CCCH_4
zf_CCCH_4
Torus
zf-CCCH_2
Pkinase
Motif
Other DBs
NCBI-GeneID:
122774015
NCBI-ProteinID:
XP_043889024
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Position
LG1:complement(1821301..1836987)
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AA seq
793 aa
AA seq
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MNSGLPASAAPLGGAGIPSVKVKFCRYYAKDKTCFYGDECQFLHEDPSMASLPLHGGGSS
PVPLSMAGGGGTPAGYSLGGSAAACPGGGGTVVPKKSEAMVPAGTSLEGQLLTVPGMEGA
ALSDASLTNSYFSSSFIGVNGFGSPAESKYSMMQRMTTSSSSPSLLNDGAKNYSHSTHDP
VNSPTSSLFSDFGALSISQRRKTPNPAASEFIPKGVPRMATMAQSSVQAFPSPLFPHPGI
SSSTATALAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPANYMVPTTAADQGAHII
QKETVGGTTYFYTDNTPAPMAGMVFPTYHIYPPTAPHVAYMQPKANAPSFFMADELRQEL
INRHLITMAQIDHSENSDVPGEVDSYHSLFPLEPLPPPNRMQKTSNFSYITSCYKAVNSK
DDLPYCLRRIHGFRLVNTKCMMLVDMWKKIQHSNSVTLREVFTTKAFGDHSLVFSYDFHA
GAETMFSRHFNDPAADSYFTKRKWGQHEPPPPRQHAGLLPESLIWAYIVQLSSALRTIHT
AGLACRVMDPSKILITGKTRLRVNCVGVFDVLTFDNSQTNHLALMPQYQQADLVSLGKVV
LALACNSLAGIQRENLQKAMELVSINYSSDLKNLILYLLTEQSRLRSVNDIMPMIGARFY
TQLDASQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRYLLKLF
RDHLFHQVTEAGTPWIDLSHIVSCLNKLDAGVPEKISLVSRDEKSVLVVTYSDLKRCFDS
TFQELQAAASGSL
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtggactcccagcttcagctgctccgctcgggggtgccgggatacccagtgtc
aaagttaagttttgccgatactacgcgaaagacaaaacgtgcttctatggagacgagtgt
cagttcctgcacgaggatccgtccatggcaagcctgcctctgcacggagggggcagtagt
cccgtgccgttgtccatggccggcggtggcgggacgccagcggggtattccctcggaggc
tccgcggcagcctgcccgggtggaggggggaccgttgtacccaagaagagcgaagcaatg
gtgcctgcaggtacatcgctggagggtcagctgttaactgtcccagggatggagggtgca
gccctgagcgatgccagtctcaccaactcttacttcagcagcagcttcattggggtcaat
gggtttggaagcccagcagagtctaaatactcaatgatgcagcgaatgactaccagcagc
agctctcctagtctccttaacgatggtgccaagaactacagccacagcactcatgatcca
gtgaactctccgacatcctcactcttcagcgattttggtgctcttagcatatcccaaagg
aggaagactcctaacccagcagcaagtgagttcattcctaagggagttccacgaatggcc
accatggctcagtctagtgtccaggccttcccttcgcctctcttcccacatcctggtatc
agcagttccacagctacagctctggctccaggcatgtccttgtctgcggggtcttctcct
ctccactccccaaaaattacaccgcacacctcacctgcccctcgtcggcgtagtcatact
ccaaaccctgccaactacatggtgcccaccacagcagccgaccagggtgctcacattatc
caaaaagaaactgtcggggggactacctacttctacactgacaacaccccagcaccaatg
gctgggatggtgtttcctacttaccatatatatccccccactgcaccacatgtggcttac
atgcagccaaaagcaaatgccccatccttcttcatggctgatgagcttcgacaggagttg
ataaacagacatttgataaccatggcccagattgaccactcggagaactcggatgtacca
ggtgaggtagacagctaccacagcctgttccccctcgagcctctccccccacccaatcgc
atgcagaagaccagcaacttcagctacatcacctcttgctacaaggccgtcaatagcaag
gatgacctgccttactgcctgaggaggatacatggtttccgtcttgttaacaccaagtgc
atgatgctggtagacatgtggaagaagatccagcactcaaactctgtaacactgagggag
gtcttcaccaccaaggcctttggagaccactccctggtgttttcttacgacttccatgcg
ggtgcagagaccatgttcagcagacacttcaacgacccagcagcagactcgtactttacc
aagaggaagtggggacaacatgagcctccaccaccacggcagcatgcgggtctcctccca
gaatccctgatctgggcctacatcgtccagctcagctctgccctgcgcaccattcacact
gcgggtctggcctgccgtgtcatggaccccagcaagattctcatcactggcaaaaccagg
ttacgggtgaactgcgttggagtgtttgacgttttaacgtttgataacagtcagaccaat
catcttgccctaatgccacagtaccagcaagcagacctagtgtcactgggcaaggtggtg
ctggcgttggcgtgtaactccctggctggcattcaaagggagaatctgcagaaggccatg
gagcttgtgtcaatcaactactcttcagacctcaagaacctcattctgtatctgctgact
gaacagtctcgcctgcgcagtgtcaatgacattatgccaatgattggagcgcggttctac
acgcaactagatgcatcgcagatgaggaacgatgtaattgaggaggacctggccaaggaa
gtgcaaaatggccgcctcttccgcctgttggccaagctgggcaccatcaatgagcgacca
gagtttcagaaggacccgacgtggtcggagacgggcgaccgctacctgttaaagcttttc
cgggatcacctgtttcaccaggtgacggaggccggaacgccctggatcgacctcagccac
atcgtctcctgcctcaacaaactcgacgctggcgttcctgagaagatcagtctggtttct
cgggacgagaaaagcgtcctggttgtgacctactctgacctgaagcgctgctttgacagc
accttccaggagcttcaggctgcggcctctggctctctgtag
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