Solea senegalensis (Senegalese sole): 122774029
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Entry
122774029 CDS
T07721
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen04136
Autophagy - other
ssen04140
Autophagy - animal
ssen04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
122774029 (atg16l1)
04136 Autophagy - other
122774029 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
122774029 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssen04131
]
122774029 (atg16l1)
03029 Mitochondrial biogenesis [BR:
ssen03029
]
122774029 (atg16l1)
Membrane trafficking [BR:
ssen04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
122774029 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
122774029 (atg16l1)
Mitochondrial biogenesis [BR:
ssen03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
122774029 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ATG16
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
eIF2A
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_DCAF12
PUMA_CC
ADIP
DUF7310
NET2A
HEF_HK
AP5B1_middle
HALZ
Motif
Other DBs
NCBI-GeneID:
122774029
NCBI-ProteinID:
XP_043889014
LinkDB
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Position
LG8:complement(12136207..12149011)
Genome browser
AA seq
603 aa
AA seq
DB search
MAERLVECAWKRHVSEQLKHRDRVQRHAFEEIVHHYHRLLEKSDLQTVLTERYQSDKYDV
QRGHETSSGADASRNDALQQEMAQMRIKHQEELTELHKKRGELAQSVIELNNQIQLKDKE
IQSNEAKLSEYQQQIDNLEGDCRELRNYLQDLERANQTLKDEYDALQITFAALEGKLRKT
TEDNQELVSRWMAEKAQEANRLNAENEKEGRRRQAKLQKELADAAKEPLPIEPDDDIEVL
DPGKGGEASPNRPLSRTPSKKISQPPPGGLLDSISNIFGRRRSTNSFSTSPENTETPSGV
CADVRVPSTALHVFEAHEGEVNAVRFSPGSRLLATGGMDRRVKLWEVVAGRCECKGALTG
SNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSARFLLDNARIV
SGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGHFDKKVRFWDIRAESIVRD
LELQGRVTSLDLNHDRTELLTCSRDDVIKIIDLRTNAIRQTLRAQGFKCGADWTRVTFSP
DGSYVAGGSADGALYVWNVLTGKVDRTLDRNHNSAINAVSWSPSGAFVASVEKGSKAILW
SDM
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcggctggtggaatgtgcgtggaagagacacgtgtcggaacagctgaagcac
agagaccgagtgcagagacacgcctttgaggaaattgtccaccactatcatagactactt
gagaagtctgacctccagactgtcctgacagagcgataccagagtgacaaatatgatgtc
cagaggggacatgagaccagttctggggcggacgcaagtcgcaacgatgctttgcagcag
gagatggctcagatgagaatcaaacatcaggaggaactaacggagctacataagaagcgg
ggagagcttgctcagagtgtgatcgaactgaacaaccagattcaactgaaggacaaagag
atccagagcaatgaagccaagttaagtgagtatcagcagcagatcgataaccttgagggc
gactgtcgggaactcaggaactacctgcaggacctggagcgagccaatcagacgctaaag
gacgagtatgacgccctgcagatcacttttgccgccctggagggcaaactgaggaagaca
acagaggacaaccaggaattggtctcacgctggatggccgagaaggctcaggaagccaac
cggctaaacgccgagaacgagaaggaaggcagacgcagacaggctaaactacagaaggag
ctggcagatgctgccaaggagccgctgcccattgagccggatgacgacattgaggtcctg
gacccagggaagggaggagaggcatcacccaacagaccacttagcaggacacccagtaag
aaaatatctcagccaccccctggtggtctcctagactccatctccaacatctttggcaga
cgtcgatcaacaaactcattcagcacttcacccgaaaacacggagacaccgtcgggagtg
tgcgcggatgttcgagtcccatccactgctctgcacgtctttgaagcacatgaaggcgag
gtgaacgcagtcaggttcagccctggctctcgtctcctggcaacaggagggatggaccgc
agggtgaagctgtgggaggttgttgcaggtcgttgtgagtgtaaaggagctttaactggc
agtaacgcgggaatcaccagcatcgagtttgatagtgctggttcgtacctgcttgctgcc
tcaaatgattttgctagtcgcatctggacagtggacgactacagactgaggcacaccctg
acaggtcacagtgggaaggttctttcagctcgtttcctattggacaacgcacgcatcgtt
tctggaagctacgaccgaactcttaaactgtgggacctgcgcagcaaagtttgtatgaaa
acggtgtttgctggctccagctgtaacgatattgtgtgtacagagcagtgtgtgatgagt
ggacactttgacaagaaggttcgattctgggacatcagagcagagagcatcgtcagggac
ctggagcttcagggcagagtcacatctctggatctgaaccacgacagaactgagctgctc
acctgctccagagacgatgtcatcaagatcattgacctgcgcaccaatgccatcagacaa
accctcagagctcagggctttaagtgtggagctgattggaccagagtcaccttcagtcca
gacggtagttatgtggcaggaggatcagctgatggcgcgctgtatgtgtggaatgtcctg
acggggaaggtggaccggactctggaccggaaccacaactctgccataaacgcagtgtcg
tggtcgccatcaggagcctttgtggcgagtgtggagaaaggcagcaaggccattctgtgg
tctgacatgtga
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integrated database retrieval system
