Solea senegalensis (Senegalese sole): 122774033
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Entry
122774033 CDS
T07721
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03030
DNA replication
ssen03420
Nucleotide excision repair
ssen03430
Mismatch repair
ssen03440
Homologous recombination
ssen03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122774033 (rpa1)
03420 Nucleotide excision repair
122774033 (rpa1)
03430 Mismatch repair
122774033 (rpa1)
03440 Homologous recombination
122774033 (rpa1)
03460 Fanconi anemia pathway
122774033 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssen03000
]
122774033 (rpa1)
03032 DNA replication proteins [BR:
ssen03032
]
122774033 (rpa1)
03400 DNA repair and recombination proteins [BR:
ssen03400
]
122774033 (rpa1)
Transcription factors [BR:
ssen03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
122774033 (rpa1)
DNA replication proteins [BR:
ssen03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
122774033 (rpa1)
DNA repair and recombination proteins [BR:
ssen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
122774033 (rpa1)
MMR (mismatch excision repair)
122774033 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
122774033 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
122774033
NCBI-ProteinID:
XP_043889022
LinkDB
All DBs
Position
LG8:2971447..2995212
Genome browser
AA seq
601 aa
AA seq
DB search
MTKLSEGAIEALANGVTTTDPVLQLLNIRRIEGGSGPARYRVMMSDGQNTLSSFMLSTQL
NTLAEENVLVPNCVCVLKRHVTNILKDGRRVVIVVEINVVKSPEEVGGKIGDPTPYTEGQ
SRAPASAPAPEVRPLQPQNRNESVNRGFNRDFGKKATSAMPSTPGGGSKVVPIASLNPYQ
SKWTVRARVTNKSSIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDKFFTLIEVGKV
YYISKGSLKIANKQYTSVKNDYEMTLNGETTVIPCEDNSDVPMVQCDFVPIADLESRDKD
AVIDVIGVCKSVDELTRLTTKANKEVSKRTLSLMDMSGKVVSVTLWGEEAEKFDGAGQPI
LAIKGAKLSDFGGRSLSASFSSTMMINPDIPEAHKLRGWYDKEGHTMEGQSLTELKGGGG
GGGNTNWKSLSDVKTEHLGHGDKADYYTCIATIVYLRKENCLYQACPSQDCNKKVLDQQN
GMFRCEKCDKEFPNFKYRLILSANIADHCDNQWVTCFQESAEAILGQNAAYLGQLKDSNE
TAFDEIFQNANFNTFVFRNRVKLETYNDESRIKATVLDVKTVDHKDYSKRLIMNIRKLAA
Q
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagctttctgaaggcgccattgaggctctggctaatggagtcaccaccactgat
cctgtgcttcaattattgaacatccgcaggatagagggaggcagtggtcctgctcgctac
cgagtgatgatgagcgacggacagaacacgctgtcctcgttcatgttgtccacgcagctc
aacactctggcagaagaaaacgtcctcgtcccaaactgtgtctgtgtcctcaagagacac
gtgaccaacatcttaaaggacggcagacgcgtggtcatcgtcgtggagatcaacgtcgtc
aaaagtcctgaagaagtcggaggaaagatcggagacccgactccgtacactgagggtcag
agtcgagctccagcgtcggctccggcccctgaggttcgtcctctgcagccacagaacaga
aatgaaagcgtgaacagaggcttcaacagagactttgggaagaaggcgacatctgccatg
cccagcactccagggggcgggtccaaggtggttcccatcgccagccttaacccgtaccag
tccaagtggaccgtccgcgcccgcgtcaccaacaagagcagcatccgaacgtggagcaac
tcgcgtggtgacgggaaactgttctccatggagatcgtggacgagagcggtgaaatacga
gtgactggctttaaccaagaggtggacaagttcttcacccttattgaagttggaaaggtt
tactacatctccaagggctcgctgaagatcgccaacaaacagtacacgtcggtgaagaac
gactacgagatgacgctgaacggggagaccaccgtcatcccctgcgaggacaactccgac
gttcccatggtgcagtgcgactttgttcccatcgccgacctcgagagcagagacaaagac
gccgtcatcgatgtgatcggcgtgtgcaagagcgtggacgagctgacgcgtctcacgacc
aaagccaacaaagaggtgtccaagaggacgctcagtctgatggacatgtccgggaaggtg
gtgtccgtcacgctgtggggagaggaagcggagaagttcgatggtgccggtcagcccatc
ttagccatcaaaggggcgaagctgtcggacttcggaggccggtctctgtcggcgtccttc
agcagcacgatgatgatcaaccccgacatccctgaggcgcataagctgagaggctggtac
gataaggagggacacaccatggagggacagtctctgaccgagttgaaaggtggcggcggc
ggaggaggaaacaccaactggaagtctctgtctgacgtcaaaactgagcacctggggcac
ggagacaaggcagactactacacctgcatagccaccatcgtttacctgcgtaaggaaaac
tgtctgtaccaggcttgcccgagccaggactgcaacaagaaagtgttggaccaacagaac
ggcatgttccgctgcgaaaagtgcgacaaagagttccccaacttcaagtaccgtctcatt
ctctctgcaaacatcgctgatcattgcgataaccagtgggtgacgtgtttccaggagagc
gctgaggccattctgggccagaacgctgcttacctgggtcaactcaaagattcgaatgaa
actgcgtttgatgaaatcttccaaaacgccaacttcaacacgtttgtcttccgtaacaga
gtcaagcttgaaacgtacaacgatgaatccagaatcaaggccacggttctggacgtgaag
accgtggatcacaaagattacagtaagaggctgatcatgaacatcaggaagctggcggct
cagtaa
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