Solea senegalensis (Senegalese sole): 122774502
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Entry
122774502 CDS
T07721
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122774502 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssen03021
]
122774502 (smarcc1a)
03036 Chromosome and associated proteins [BR:
ssen03036
]
122774502 (smarcc1a)
Transcription machinery [BR:
ssen03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122774502 (smarcc1a)
Chromosome and associated proteins [BR:
ssen03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122774502 (smarcc1a)
PBAF complex
122774502 (smarcc1a)
GBAF(ncBAF) complex
122774502 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
BRCT
BRCT_2
SpeFL
Motif
Other DBs
NCBI-GeneID:
122774502
NCBI-ProteinID:
XP_043889787
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All DBs
Position
LG9:4154455..4174774
Genome browser
AA seq
1139 aa
AA seq
DB search
MATAATTAGGTGSGGPAGGPVGGGGAAVGRKKDGGPSTKFWESSETISQLETVRLWIGKH
YKKYVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFHDFKAGGALCHIL
GSVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLSPDIEQKQAS
KLKDIIKRHQGSMTDDKSKATHHIYPSPSQQEEEEWLRPVMRKDKQVLVHWGLYPDSYDT
WVSASEVDGDIEDPPSNDRPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKLVNFRQRIFP
KEEESSRTPDRKERKANSAGKKRRRSPSPPSTPVESRKKGGKKGNPGSHWKRRGHRGEEE
DTEEDITKDMDDSSAGASMEEGSVPKNAGSKKDIENTPIKGGNVADLDDMEDDSVLSGGK
DDDDQGKAEINRLMDTSEDNVTEQTHHIIIPSYSSWFDYNCIHEIERRALPEFFNGKNKS
KTPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDS
ESRPLPMGPPPTPHFTVLADTPSGLVPLNHRPPPIPPPQQMPNFADKSKDKAIDLQNFGL
RSDLYKKIPKGKSVNSTRDWTEQETLLLLEALEMFKDDWNKVSEHVGSRTQDECILHFLR
LPIEDPYLENSEATLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAARAALEEFS
RVREEVPAELVEAHVKKVQEAARSTGKVDPSFGLESSGIAGTAPDEPEKTESTEPEKIET
DTDSQQADKAELKEEAEKPSESAEKNDKTEAVDKVKKEGAETSEREEEPEEGGEAKTAPA
DKDKEEAMETSSSEQEKDKEDKAATDEGEEKRKKLEHDIGEGNIATAAAAALASAATKAK
HLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAF
HMEQLKYAEMKARQQMEQQAAAAAAAAAAQAQGQGQGQGHTPGSGPHSGPPQPGMHPGGP
PPHHGGPPPHHGAPPPHHGGPPPGAAMHPGYPPIGHHPMAPHHPGQTGPMGPSQPIPGRM
LSGPPSAGPPPGGMPPMMPPRHPGAPNGMYPGPAPAQPEGIPPVPVGPPAPPSARVAEN
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgaccacggcaggcgggacgggatccggtggaccggccggcggcccg
gtcggtggtggaggagcagcggtgggacgtaaaaaggacggcggcccgtccacgaaattc
tgggaaagttcagagacgatatcccaactggagacggtgcgactgtggatcggaaagcac
tacaagaagtatgtccagaatgactccccctccagtaaaagcttggcgggcctggtcgtc
cagttgcttcagttccaggaggacgcatttggacgcagggtcaacaatcctgctcttacc
aaactacctgccaagtgtttccacgatttcaaagcaggaggtgctctctgtcacatcttg
gggtcggtttacaaatttaagagtgaacagggctggcggagatttgacctgcagaatcct
tccaggatggacaggaatgtggaaatgttcttaaatgttgagaagaacttggtccagaat
aactgcctgactcgacccaccgtcttcctgtcaccggacatcgagcagaaacaggccagt
aaactcaaagacatcatcaaaaggcaccagggctccatgactgatgataaatcaaaagcc
acccaccacatttacccgtcaccatcccaacaagaagaggaggagtggcttcgtcctgta
atgaggaaagacaagcaggtgctggtgcactggggtctttacccagacagctatgacacc
tgggtatcagccagtgaggtggatggcgacatagaggatccacccagcaacgacagaccc
tggaaggtccatgccaagtgggttttagacacggacgccttcaatgagtggatgaatgaa
gaagactacgaggtagatgagaacaagaaactagtcaacttccgtcagaggatcttcccc
aaagaggaggagtcttcccgtacacccgatcgtaaggagcgcaaagccaactccgccggc
aagaagaggagacgctcgccctcgccgcccagtactcctgtcgagtctcgcaagaaggga
ggaaagaaagggaaccccgggtctcactggaagcgacggggccacagaggagaagaggag
gacactgaggaggacataaccaaggacatggacgactcatcagccggtgccagcatggag
gagggaagcgtgcccaaaaacgcaggttcaaagaaggacattgaaaacactccaataaaa
ggagggaatgtggcggacctggatgacatggaggatgactctgtgctgtctggtggaaag
gatgacgacgaccagggcaaagcggagatcaaccgactgatggacactagcgaggacaac
gttactgaacagactcatcacatcatcatccccagctactcttcttggttcgactacaac
tgcatccacgagattgagagaagagccttgcccgagttcttcaatggaaagaacaagtcc
aaaaccccagagatatacttggcctaccgtaacttcatgatcgacacgtatcggctgaac
cctcaggagtatctcacctccacctcctgccgcaggaacttgaccggggacgtgtgcgcc
atcatgagggttcatgccttcttggagcagtggggtttggtaaattaccaggtggactct
gagagtcgcccactgcccatgggccccccaccgacaccccactttactgtgctggctgac
acaccctctggccttgtgcccttgaaccacagacccccaccaattcctcctccacagcag
atgcccaactttgcagacaaaagcaaagacaaagccattgacttgcagaactttggactt
cgctctgacctttacaagaaaatccctaagggtaaaagtgtcaactccaccagggactgg
actgagcaggagactctgctgctgctagaggcccttgagatgttcaaagatgactggaac
aaagtgtcggagcatgtcggttcacgcacccaagacgagtgtattctgcacttcctgcgg
ctgcccatcgaggatccatatctggagaacagtgaggccaccctgggccccctggcctac
cagcccatacctttcagccagtctggaaaccctgtcatgagcacagtagccttcctggcc
tctgtggttgaccccagagtggcatctgctgctgccagggcagccttagaggagttctcc
cgtgtgcgtgaggaggttccggctgagctggtggaggctcatgtgaagaaggtgcaggag
gctgccaggagcacagggaaggtcgacccctccttcggcctggagagcagtggcatcgcc
ggcactgcccctgatgagcccgaaaagactgaatcaacagaaccagaaaaaatagaaact
gacacagactcccaacaagccgataaggcggagttgaaggaggaggcagagaagcccagt
gagtctgcagaaaagaacgataaaacagaagccgtagacaaggtgaagaaggagggagct
gagacgtcggagcgcgaggaggagccagaggaaggaggggaggccaagacggcaccagca
gacaaagacaaggaggaggctatggagacatcatcctcagagcaggagaaggacaaggag
gacaaggcggctacagatgagggagaggagaagaggaagaagctggagcatgacatcgga
gaaggaaacatcgctacagcggctgcagctgcgctggcatctgctgccaccaaggccaag
cacttggcagcagtagaggagaggaagatcaagtccctggtggctctgctggtggagacc
cagatgaagaagctggagatcaaactgaggcacttcgaggaactggaaaccatcatggac
cgagaaaaagaggctctggagcttcagcggcagcagctgctcacagagcgtcaggcattc
cacatggagcagctcaaatatgcggagatgaaggcaaggcagcagatggagcagcaggca
gctgctgctgccgccgctgcggcagcccaggcccaaggacaaggacagggacagggacac
acccctggttctggaccacactctggacccccacaaccaggcatgcatcctggaggaccg
ccaccacatcatggaggacctccaccacatcatggagcacctccaccccaccacggaggg
ccgccacccggggctgccatgcaccctggctaccccccgataggtcaccaccccatggcc
ccccaccacccaggacagacaggaccgatgggaccaagccagccgattccgggacgtatg
ctctccggccccccctctgcaggcccccctcccggcggcatgccacccatgatgccccca
cgccaccctggagctcccaacggcatgtaccctggaccagcacctgcacagcctgaaggg
attcctcccgtccctgtgggtcctccagcgcccccaagtgcacgagtggctgaaaactaa
DBGET
integrated database retrieval system
