Solea senegalensis (Senegalese sole): 122774594
Help
Entry
122774594 CDS
T07721
Symbol
smg5
Name
(RefSeq) protein SMG5
KO
K11125
protein SMG5
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122774594 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122774594 (smg5)
03032 DNA replication proteins [BR:
ssen03032
]
122774594 (smg5)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
122774594 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
122774594 (smg5)
DNA replication proteins [BR:
ssen03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
122774594 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
122774594
NCBI-ProteinID:
XP_043889951
LinkDB
All DBs
Position
LG9:3341883..3363154
Genome browser
AA seq
1125 aa
AA seq
DB search
MSGPGQDSEPEAKVLHIKRLYRAVVESVHKLDVIIGSKASYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSASPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVMPHMGMPFNQLGTLAGSKFYNVEATYYYLRCIQSET
PFEGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKRLLVSFMYLQSLLQPKNS
LMETEVTSLCQSVLEDFNLVLFYLPPITHGGAHQSPSEEEEEQQHSDSSCPVLPDTLVFK
MVVTCLMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEEAESQVPPLHTDA
TDDLEIRDLASLPTDHSEEKPLQNGSLEQEDEEEEEAAKEEDGPEKVVAMKQSSVDEQRK
SEDDKQRQKKKYTRLSRLRRRRCAHKDGRGEDDSDLSEGFESEDDEDDDEEKRGRCDSTG
GTAKRAPLNSSSVRKETKRDPLGEEGSWGSGSEEEEEGGTAFDVETDSDMNSQESRSDLE
DIEDAESSDNLEGQAREHQDEEEDEEQPKEEGGERNGDTPPTTNGPLLPTDSSISSNLQA
MSSQLFQAKRCFRLAPTFSNMLLRPQASSSADIPTSTDASAPPSQETPPPPGESSSDINP
GTANGTSEHDLDSDSEGSEPSTQSVPSEKTLLEKLEILTNQGLIQVVKVFVDWLRTNTDI
ILMCAQSSQSLWNRLSVLLNLLPDGNKMLEAELGLNTELTQLLNECEQPGLVQTLLLPED
VALRHLPALGVAHRRLDFSRRNTSLSPLQECVVRVCCIRSFGHFVTNLQGNVLHFNPEAG
IFTSISQCEQDNLVQQAKAQFRMAEEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQS
SMSPYLVPDAAALCQHLNLVRQLASSGCFIIIIPRTVIDGLDRLKKENPGARDGIRFLES
EFRKGNRYIRCQKESGRSFERDKLKRQDVEAWHLYKMVDSCRQLTVSQNNGDEDTAGMVT
ILTGHQVEELCNRSAAMKTALQAASSAGMELKNIVDFYRQWKEMG
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgagtggaccgggacaggacagcgagccagaggcgaaagtccttcacatcaagcggctt
tatagggctgtggtggagtctgtgcacaaactggatgtcatcatcggcagtaaagcgtcc
tacagagaggtcttcaagccggagaacatcagccttcgcaacaagctgcgagagctttgt
gtgaaactgatgtttctccaccctgtcgactacggccgcaaggcggaggagctgctctgg
aggaaggtttactacgaggtcatccaggtcatcaagaccaacaagaagcacatccacagt
cgcagcgctttggagtgtgcctaccgcacgcacttgatcgccggcgtgggtttctaccaa
cacctgctgctctacatccagtcccattaccagctggagctgcaggactgcatcgactgg
acgcacgtcacagaccctctgatcggccgaaagaaaccagtgtctgcctcacccaaggag
atggagtgggcacagatggcgtgtcatcgctgtctggtttacctcggagatctagcccgt
taccagaatgagcttgctggtgtggaggctgagcagctggctgaaaggttttatcatcag
gccctttctgtcatgccacacatgggaatgccttttaaccaactgggcacattggcagga
agcaagttctacaacgtcgaagcaacctactactacctacgctgcatccaatcagagacc
ccctttgagggcgcctatggcaacctgaagcgcctgttcgacaaagctgctaagatgtac
catcaagtgaagaagcaggaaatgaagaagctgtctccatctcgtcaaagatcaaaagac
atcaaacgcctcctggtgagcttcatgtacctgcagagcctcctgcagcccaagaacagt
ctgatggagactgaggtgacgtcactctgccagtcggtgctggaggactttaacctggtg
ctgttctacctgccgcctataacacatggtggcgctcaccagtcgccgagtgaggaagag
gaggagcagcagcacagtgacagctcctgccccgtgctgccggacaccctcgtctttaag
atggtcgtcacttgtctgatggtggtgcacagcctgaagaggggaggatctaagcagtac
agcgcatccatcgcattcactctggccctcttctcccacctggtgaaccacgtgaacatc
cggctgcaggctgaactggaggaagcggagagccaggtgcctccacttcacactgatgcc
actgatgatctggagatcagggatttggcatctttaccgacggatcactccgaagagaag
cctctgcagaatggctctctggagcaagaagatgaagaggaggaggaggcagctaaggag
gaagatggccccgagaaggttgttgccatgaagcaaagcagcgtggacgaacagcgcaag
tctgaagacgacaaacagaggcagaagaagaaatacactcgcctgtctcgactccgcaga
cgtcgctgtgctcacaaggacggccgaggagaggacgacagtgacctcagcgaaggcttt
gagagcgaagacgacgaagacgatgacgaggagaagcgcggacgttgcgattcaactggt
ggcaccgcgaaaagagcccctctcaactcgtcctctgtcagaaaggagacaaagagagac
cccctgggtgaggagggcagctgggggagtggctccgaggaggaggaggaaggcggaaca
gcgtttgatgttgagaccgactctgacatgaacagccaggagtcccgctcagacctggaa
gacatcgaagacgcggagagctcggacaacttggagggtcaggctcgagagcaccaggat
gaagaggaggacgaagagcaacctaaggaagaaggaggcgagaggaacggcgacactcct
ccgactaccaacgggccactgttgcccaccgactccagcatcagcagtaacctccaggcc
atgtcctcgcaactctttcaggccaaacgctgcttccgcctggcaccgacgttcagtaac
atgctgttgaggccacaggcctcgtcctccgcggatattcccacctccactgatgcttcg
gctccaccctcccaagaaactccgcctcctccaggggagtcttccagcgacatcaaccct
ggcactgccaacggaaccagtgaacatgatttggactctgattcagaggggagtgaaccc
agcactcagtccgtgcccagtgagaaaacccttctggagaagctggagatcttgaccaat
cagggtttgatccaagtggtgaaggtctttgtcgactggctaaggaccaacactgatatt
atcctcatgtgtgcacagagttctcagagtctgtggaaccgactgtctgtcctgctcaac
ctgctgccagatggaaacaagatgctcgaggctgagcttggtctgaacacagagttgacg
cagctgttaaatgagtgtgaacagcccggtttggtccagaccctgctgctgcccgaggac
gtggctctgcgacacttgcctgctctcggcgttgctcaccgtcgccttgatttcagccgc
cgcaacacctccctcagccccctgcaggagtgtgtggtgcgagtgtgttgcattcgcagt
tttggccactttgtaacaaatcttcagggcaacgtgcttcacttcaacccagaggcggga
atcttcaccagcatcagccagtgtgaacaggacaatctggtgcaacaggccaaggcccag
ttcagaatggcggaggaggaggcgcgtcggaatcgcttaatgagggatatggcccaactt
cgattacagttggaggtgtcgcagctagagggcagccttcaacagcccaaggctcagtca
tccatgtctccttacctggtgccagacgcagctgctctctgccagcacctgaacctcgtc
cggcagctggccagcagcggctgcttcatcatcatcatcccccggacagtaatcgatgga
cttgaccgactgaagaaggaaaaccctggtgcgagggacggcatccgcttcctggagtct
gaatttcgcaaaggcaacaggtacatacgctgccagaaggagtcgggtcgtagttttgaa
agagacaagctgaaacggcaggacgtggaagcctggcatctgtataagatggtggacagt
tgtcgtcagttaaccgtctcccagaacaacggagatgaagacacggccggcatggtgacc
attctgaccggccatcaggtggaggagctttgcaatcgatcagcagctatgaagacggcg
ttgcaggcagctagctcggcgggcatggagctaaagaatatcgtggatttctaccggcag
tggaaggagatgggctga
DBGET
integrated database retrieval system
