Solea senegalensis (Senegalese sole): 122774764
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Entry
122774764 CDS
T07721
Name
(RefSeq) polyadenylate-binding protein 1A
KO
K13126
polyadenylate-binding protein
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03015
mRNA surveillance pathway
ssen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122774764
09123 Folding, sorting and degradation
03018 RNA degradation
122774764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122774764
03041 Spliceosome [BR:
ssen03041
]
122774764
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122774764
mRNA cycle factors
Stress granule specific factors
122774764
Spliceosome [BR:
ssen03041
]
Complex C
Other components
Complex C specific factors
122774764
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_3
RRM_occluded
PABC_AtC3H46
POP1_C
Motif
Other DBs
NCBI-GeneID:
122774764
NCBI-ProteinID:
XP_043890208
LinkDB
All DBs
Position
LG9:complement(7820639..7828450)
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AA seq
635 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDEKLRELFNKYGPALSIRVMTDESGKSKGFGFVSFER
HEDAQKAVDDMNGKEMNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRA
AYYSANQLAQLRPSPRWATQGVRPQHFQNMPSAVRPSAPRPQTFNTIRPTATTNTQVPRM
MASQRMPTQAMSQRPASASATAAPVRTMPQYKYAAGVRNPQQHMPSQPQVPMQQPAVHVQ
GQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKSTTPAVVPNV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccagcgcgcctagctaccccatggcctccctctatgtgggagacctgcacccg
gacgtcaccgaggccatgctctacgagaaattcagcccggcgggacccattctttccatc
agagtgtgcagagatatgatcacccgccgatccctgggctatgcctacgtcaactttcag
cagcctgcagacgctgagcgagccctggacactatgaatttcgatgtgatcaaaggcagg
cccctccgcatcatgtggtctcagcgtgacccctcactgaggaagagtggagtgggcaac
atcttcatcaagaacctggacaagtctattgataacaaggctctatatgacaccttctct
gcctttggaaacatcctttcttgcaaggtggtttgtgatgaaaatggctcaaagggttac
ggctttgtgcactttgagacccacgaagctgctgaacgagccattgagaaaatgaatggc
atgttgctcaatgacagaaaagtatttgttggacgatttaaatcgcgcaaagagagggaa
gctgagcttggagcacgtgccaaagagtttaccaatgtttacatcaagaacttcggggag
gacatggatgacgagaaactgagagagttgtttaacaaatatgggcctgcactcagcatc
cgggtaatgactgacgagagtggcaaatccaagggatttggctttgtgagctttgagaga
cacgaagatgcacagaaggccgtagatgacatgaacggtaaagaaatgaatggcagacag
gtgtatgtgggtcgagcacaaaagaaaggggagcgccagaatgagctcaagcgcaaattc
gagcagatgaaacaagatcgcatgaccagataccagggagtcaatctatatgtaaaaaac
ctggatgatgggctggatgacgagcgcctgcgaaaagaattctctccatttggaaccata
acaagtgcaaaggtgatgatggagggtggccgcagcaaaggctttggctttgtgtgcttc
tcttccccagaagaggccactaaagctgtaacagagatgaatgggcgtattgttgctaca
aagccactgtatgtggccctggcccagcgcaaggaggagcgtcaagcccatctcacaaac
cagtacatgcagaggatggccactgtccgcgctgtacccaatcctgtcatcaacccatac
cagcctgccccaccctcaggctatttcatggcagctatacctcaggctcagaaccgtgcc
gcttactactctgcaaaccagctggcacagctccgcccaagcccacgctgggctactcaa
ggagtgcgtcctcaacacttccaaaacatgcccagtgcagtgcgcccatcagctcccagg
ccccagactttcaacaccatccgtcccaccgccaccaccaacacccaggtgccacgtatg
atggcttcccagagaatgcccacccaggccatgagccagcgccctgccagtgcttcagcc
actgctgccccagtacgtaccatgccccagtacaaatatgctgccggtgtgcgcaaccct
cagcagcacatgccctcgcaaccacaagtccccatgcagcagcctgctgtccatgtccaa
ggacaggagcctctgactgcctccatgctggctgctgcccctcctcaggaacagaagcag
atgctgggtgagcgtctcttcccccttatccagaacatgcaccccagcctggcgggcaag
attactggaatgcttctggagatcgacaactctgagcttcttcacatgcttgagtcacct
gagtcactgcgctcaaaggttgatgaggctgttgctgtgcttcaggcccaccaggccaag
gaggctgctcagaagtcgaccacccctgcagttgttcctaatgtttaa
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