Solea senegalensis (Senegalese sole): 122774987
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Entry
122774987 CDS
T07721
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03030
DNA replication
ssen03410
Base excision repair
ssen03420
Nucleotide excision repair
ssen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122774987 (lig1)
03410 Base excision repair
122774987 (lig1)
03420 Nucleotide excision repair
122774987 (lig1)
03430 Mismatch repair
122774987 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssen03032
]
122774987 (lig1)
03400 DNA repair and recombination proteins [BR:
ssen03400
]
122774987 (lig1)
Enzymes [BR:
ssen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122774987 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
122774987 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
122774987 (lig1)
DNA replication proteins [BR:
ssen03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
122774987 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
122774987 (lig1)
DNA repair and recombination proteins [BR:
ssen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
122774987 (lig1)
NER (nucleotide excision repair)
Other NER factors
122774987 (lig1)
MMR (mismatch excision repair)
Other MMR factors
122774987 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
122774987
NCBI-ProteinID:
XP_043890576
LinkDB
All DBs
Position
LG1:3834010..3889146
Genome browser
AA seq
1007 aa
AA seq
DB search
MQRSIASFFQPKSKDKDNVVQKKSTDEPAKKPLKSPLKVQNGAQEADSPVKKVAKRSRQI
LDSDDDETPVVKEQVSTKGQGDKEAPSKTEKKDDVFKAVPTPLSPPPVPATPVTPATPAT
PASSASPGTPSTPNSISPSGIVKRKTARKMFPKRKLDESRSGSESQREEADAKEEQGQQN
KRPRVEPVANSPGNPGDPMEEGAKEEQVEKPVTKDNSPDEEENKEKEEREKAKEERRVER
KSSDEEEKKAEGAEKKNEAKEKMDDEKGPAVAKMEVDEKDTREGEKSPKSQAAKEQKDKE
QAKKAPISSFFAPRKAAVKTEKQEKKDGEKRRSAERKSSAEESKETKSESTSGEKDYNPS
RPGYHPIDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSPDDLLC
CVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSN
QRIMFQPASLTAGGVFKKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGK
LRIGLAEQSVLSALNLAVCLTPPGQGFPPAVIDAGKGMSTESRRAWIEEKSLILKQTYCE
MPNYDILIPVLLKEGIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVLKKFDEAAFTCEYKY
DGERAQIHILESGEVRVFSRNQEDNTSKYPDIISRIPKMKKDSVVSCVLDTEAVAWDREK
KQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRALLKESFSEV
EGEFVFARSIDSDNTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDY
LEGVGDTVDLCVIGAYMGKGKRTGTYGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQHY
KFLKDHILPKPRAYYRVDQSAEPDVWLDAMQVWEVKCADLSLSPVYKAALGLVDPEKGIS
LRFPRFLRIRDDKKPEDATTGAQIADLYQKQQQIQNQGEKADPEDYY
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcagcatcgcatccttctttcagcccaagagcaaagacaaggacaacgtcgta
cagaagaaaagcacagatgaaccagcgaaaaaacctttgaagagccccctcaaggtgcag
aacggcgcgcaggaggccgattcacctgtcaagaaggttgccaagcgcagccgtcaaatc
ctggacagtgacgatgacgagacgcccgttgttaaagaacaagtctctaccaagggacaa
ggagacaaagaggccccgagtaagacggaaaagaaggatgatgtgtttaaggcagtccca
acacccttgtctccaccaccagttccagccacccctgtaacacctgccactccagccacc
ccggcctcttcagcttcaccaggaacgcccagcactcccaactccatctccccgtctggg
atcgttaagcgcaagactgcgaggaagatgttccccaaaaggaagcttgacgagagcaga
agtggcagcgagagtcagagagaggaggctgatgccaaggaggagcagggtcagcaaaat
aaacgaccccgtgtggagcccgttgctaacagcccagggaaccccggtgaccccatggag
gagggagcaaaggaagaacaagttgaaaagccagtgaccaaggataacagccctgatgaa
gaggagaacaaggaaaaagaggagcgagagaaggccaaagaggagaggcgggtcgagaga
aagagctctgatgaggaagaaaagaaagctgagggggcggaaaagaaaaatgaagcaaag
gagaagatggatgatgagaaagggcctgccgttgccaagatggaggtggatgaaaaggac
acgagagagggagagaagagcccgaaaagtcaagcagcgaaagagcagaaagataaggag
caggccaagaaagcccccatcagcagtttctttgctcccagaaaagccgcggtgaagaca
gagaagcaagagaagaaggacggagagaaaaggaggagcgcagaaaggaagagttcggcg
gaggaaagtaaagagacaaaaagcgagtcaacctcaggagaaaaggattacaatccatcc
aggccgggttatcaccccatagaccacgcctgttggaaacaaggccagaaagtgccgtac
ttggcagtggctcgcacctttgagaagattgaagaggactctggcagactgagaaatatc
gagacactgtcgaacctgctccgctctgtgctgctgctctctccagatgacctgctgtgc
tgtgtgtatctgtgtttgaaccagctgggtcctgcttacctgggaatggagctcggcgta
ggagagacggtcctgatgaaagctgtcgcacaagcaacagggcgacaattggacaaaatc
aaagcagaggcccaggagaaaggagatttgggtctcgtggccgagagttcccgtagcaac
cagcgcattatgtttcaaccggccagtctgacggcagggggcgtgttcaagaaattgaag
gaaattgccagcatgagtgggaactcggccatgaataagaaaatcgacatcatcaaaggc
ctctttgtggcatgccgtttttctgaggcccgctacatcgtcaggtcccttgctgggaag
ctgaggattggcctggctgagcagagcgtcctctctgcactcaacctggctgtgtgcttg
accccacctggacaaggtttccctcctgctgtgatcgatgcagggaaggggatgagcacc
gagagcaggcgggcctggatcgaagagaagagtctgattctcaaacagacttattgtgag
atgcccaattacgacatcctcatccctgttctgctcaaagaaggcatagaccagctaccc
aaccactgcaagctcactccaggagtacctctgagacccatgttggctcaccccacaaag
ggtgtcggcgaggtgctaaagaagtttgacgaggctgcgttcacctgcgagtacaagtac
gacggcgagcgtgcacagattcacattctggagagtggagaagtgcgagttttcagtcgc
aaccaggaagacaacaccagcaaataccctgatatcatctctcgcattcccaagatgaag
aaggactcggtggtatcctgtgtcctggacacggaggctgtagcctgggatcgtgagaag
aaacagatccagccattccaggtcctcaccacccgaaagagaaaggacgtggatgcctcg
gagatcaaagtgcaagtgtgcgtgtacgcctttgacctcctctatctgaacggcgagtcc
ctggtgcgacagccgttgtgtcggcgtcgggctctgctgaaagaaagcttctcagaggtg
gagggagagtttgtgttcgctcgatccatcgactctgacaacaccgacgccattgccgag
ttcctggagcagtctgttcgagattcctgtgagggcctgatggtgaaaacactggagaag
gatgccacctatgaaattgccaagcgctctcataactggctgaagctgaagaaagactac
ctggagggtgtgggcgacacagtggacctgtgtgtgatcggtgcttacatggggaaaggc
aagaggacgggcacctacgggggctttctgctggcctgctatgacgaagagaacgaggag
ttccagtccgtctgcaagatcggcacaggtttcaaggatgaagatctggagcagcattat
aagttcttaaaggatcatattctgcccaagcctcgagcctactaccgcgtcgaccaatca
gcagagcccgacgtgtggctcgatgccatgcaggtgtgggaagtgaagtgcgctgacctg
tcgctgtcacccgtctacaaggctgccctgggattggtggatccggagaagggcatttct
ctgcgcttcccccgctttcttcgaatcagagatgacaaaaaacccgaagacgccacgacc
ggagctcagattgcagatttgtaccagaagcagcagcagatccagaaccagggggagaaa
gctgacccggaggactactactga
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