Solea senegalensis (Senegalese sole): 122775022
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Entry
122775022 CDS
T07721
Symbol
chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8 isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
122775022 (chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssen03036
]
122775022 (chd8)
Chromosome and associated proteins [BR:
ssen03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
122775022 (chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
HDA2-3
HTH_Hrp3
Motif
Other DBs
NCBI-GeneID:
122775022
NCBI-ProteinID:
XP_043890630
LinkDB
All DBs
Position
LG1:complement(5870782..5888793)
Genome browser
AA seq
2581 aa
AA seq
DB search
MADPIMDLFEDTPLFNLDALPDDSFSQVSSDPVEEALKLALGQVDPPTEPESTPELMVNA
GPSVPVAAPSISDPTPVQVPIQQSVPVATAQTVSIAAAPIMNPAPADTVPQIQAQTNIPI
ASNTTAVSSSTILLSSPLTVSSSPATTTATTTQLTQITHQLTPQQLAAIAQQAGGKIVIL
KGPQGQAQVLQTVSGATTQTSGKVIRVLSGGPLKPGMSILQGGTVLNQASPGQAQVKGGG
VQRLLQSPNGPVKQLLLTSMPQQTQGQIQVQIPAQAQMVQGQTQVQVQPQAQATQIQVQA
QGQAAQIQGQTTQIQVQAQTQVQLQPAMQAHGAEGKRITLVLQQPSQTGSAASVGQAVSA
QHQVTGGQQQQPQTPTRLVLGQLPGGKLVLQGSQLAALTQARAAGQAGGQPKVLTIQLQV
QQQPNQQGGVKYQLISGAGNAGNPQVLQISQGQGGQRVAVPLKMLLQPQTSVASSAGGTV
SVVKVINTSAAGPSTTTTTSSQAIRITKAPGEPASVRRVEILCKQEKANRIVAEAIARAK
ARGEKNLPRVLNQDELPSTQTSPEIGGTITVVSAPKKKNSGGSKKKSPVAGGATPKPVGG
ADKKSKVKTPGGTPGVAGGTVTPGTGSKSKSKTKTNTITLVGAKKRKRNASSDHSDGELS
PASPATLEDDMIMKRRSNRVVKRKKYTEDLDIKITDDEDEQEDVDVTTTAAAVASISGST
AAQLKQEMELDGDGQPTMQFFVENPSEEDAAIVDKVLSMRLTKKEVCPGQYTTVEEFFVK
YKNYSYLHCEWASLQQLEKDKRIHQKIKRFKTKHAQMRHIFQEEEEPFNPDYVEADRILD
VSHSVDKDNGEPVIYYLVKWCSLPYEDATWELKEDVDEGKVEEFGKIQNRQPRLKKMARP
PASSWKKLEETREYKNGNILREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIALLS
EVYNAGIQGPFLVIAPLSTITNWEREFSTWTNMNAIVYHGSLASRQMIQQYEMYSKDDKD
HLIPGAYKFDALITTFEMVLSDCPELREISWRCVIIDEAHRLKNRNCKLLDSLKMMDQEH
KVLLTGTPLQNTVEELFSLLHFLEPAQFPSETEFLRDFGDLKTEEQVQKLQAILKPMMLR
RLKEDVEKNLAPKQETIIEVELTDVQKKYYRAILERNFSFLSLGANSNSNVPNLLNTMME
LRKCCNHPYLINGAEEKIVAELRQVYDPMAPDFHLQALIRSAGKLVLLDKLLPRLKAGGH
KVLIFSQMVRCLDILEDYLINKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTR
AGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMLDK
ASLKLGLDRAVLQSMSGNKESNVNGIQQFSKKEIEDLLRKGAYAAIMDENDEGSRFCEED
IDQILQRRATTITIESEGKGSTFSKASFVASENRNDIALDDPEFWEKWAKKADIDMDTIN
RKNTLVIDTPRVRKQTRQFSSLRGEGGDLSDLDSDDEYPPANSRQSRSSRRADRHSGGGY
GRTDCFRVEKHLLVYGWGRWRDILSHARCKRRLSERDVETICRVILVFCLLHYRGDENIK
SFIWELITPPENGCGPTTLLNHSGLSIPVPRGRKGKRVKAQSTFDVQKVEWIRKYNPDTL
LLDESYRKHLKHQCNKVLLRVRMLYYLKQEVIGEHADAVLKGAVIRELDIWMPEMEQQEV
PAGWWDSEADRSLLSGVFKHGYEMYTTMRADPCLCFLERAGRPDDKAIDAEQHTGDTEMG
EDADYDKYSEDPEFKPASRHKDLFEENDSMNVDDEISVEERSGPLVTENLLSLSGASNWP
SSSSLTARLRRLITAFQRSYRQEQLKIEAEAKGDRRRRRCEQASKLKEIARQERQQRWTR
REECDFYRVVSTFGVVKLKKEPDFPEAGDLEFDWTRFRTFARLDKKTDESLSRYFRSFVA
MCRRVCHLPPGREDPAENSQTVAPITEERASRTLYRISLLRRLRERVLPHPSLEERLTLA
LPNSELPSWWNIPDHDRQLMLGANLHGVSRTELSILADPQFTFNQAREEFIQNQQAPPPQ
PLPIMPLIQPKTEDDLPDVKEEVADDEARLLGAELLADLQSTPLSHHDGKVHGQGWNFKK
SRGRGGRTEGGTKGEGGSDSDSDSDSGSSSSEQSGSSDESGESEEEGEKAAKVCDMDEDN
SLLSITPSQDGIPPPDPIRVDWPKDRVLINRLDTLCTLVLTGQWPSGRRYVPEAQLNPSS
DLMGDEMAFTRLIRKPSSMTAGPGAEGEDGEFTVKLLKEEGLKLTFSKQALMPNGSGESS
NRKKRKDQELSDTEGLLDPLERTPRRRDPPTWLKENPDYEVEGDMLELLVNRSKRKRRRR
ANKVLTGSEKVKVINMRTGKKVGAAFCPMLQDLREYLEENPDNAVAPDWSDTVRSSGFLP
ETHFHRLLTEHSDIPKKSRRRHHHHHHHHHHHHHHTPEPVPEDPNLDGVEEETLVSDGAY
MMDEEDLETSHHFLTSPDFDVKMMGGDSISHGDYDSSDQEALLDDVIIAQKDSDSSSSSE
D
NT seq
7746 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcccatcatggacctttttgaggacactcctctgtttaacctggatgccctg
ccagatgactccttctctcaagtctcttcagaccctgtggaggaggctcttaagctggcg
ttgggccaagtggacccaccgactgagccggagtccactcctgaactcatggtcaatgct
ggccccagtgttcctgtagcagccccctctatctcagaccctacccctgttcaagtacct
atacagcagtcggtgcccgtggcaactgcacagactgtttctatagctgcagctcccatt
atgaaccctgcccctgctgatactgtacctcaaatccaggcccagaccaacatacccatt
gccagcaacaccactgcggtgtccagcagcaccatcctgcttagctcacctctgactgtt
tcctcctccccagccaccactactgccacaacaacgcagctcacacagataactcaccag
cttactccccagcagttagctgccattgcacagcaggctggtggtaaaattgttattctc
aaagggccgcagggtcaagcccaggtgctgcagactgtatccggagccacaacccagacg
agtggaaaggtgatccgtgtgttgtctggtggtcctctcaaacctggcatgtccatattg
caggggggcactgtcttgaatcaggcaagtccaggacaagctcaagtaaagggtggaggg
gtacagagattgctacaatctcccaatggtccagtgaaacagttgttgcttacttccatg
ccacagcagacgcaaggccagattcaggtgcagattccagcccaagcacagatggttcaa
ggccagactcaagtccaagttcagccgcaggcccaggccacacaaatccaggtacaggcc
cagggccaagctgcacagatccaaggccagacaactcaaatccaggtccaggctcagacc
caggtgcagctccagccagccatgcaggcccatggtgctgaaggaaaacggataaccctg
gttctccagcagccctctcagactggctctgctgcctcagtgggtcaggctgtttcagcc
cagcatcaggtcacaggaggtcaacagcagcagccccagacaccgactagactggtgttg
ggtcagctccctggaggcaaactggtgctccagggaagccagctggctgcactgacccag
gctcgggctgcaggtcaggccggagggcaacccaaagtcctcacaattcagctacaggtg
cagcagcagcccaaccaacaaggaggcgtcaagtaccagctgatttcaggggcaggaaat
gctggtaacccacaggtgttgcagatctcacagggccaaggagggcaacgagttgcagtg
ccactcaaaatgcttcttcagccacagacaagcgtggcatcttcagccggtggcacggtc
tctgtggtgaaggtaatcaacacatctgcagcaggcccctccaccaccaccaccacttcg
tcccaggccatccgcatcaccaaggccccaggcgagcctgcctcagttcgacgagtagaa
atcttgtgcaagcaggagaaggcgaaccgtattgtggctgaggctatagcccgggccaag
gcacgtggtgagaagaacctgcccagagtcctgaatcaggatgagcttccatcaacccag
acctctcccgagatagggggtaccataactgtggtgtctgctcctaagaaaaagaacagt
ggcggaagcaaaaagaaaagtcctgttgctggtggagcaacacccaaacctgtaggcgga
gctgataaaaagagcaaagtgaagacaccgggaggaacacctggagtggctggaggaaca
gtaacacctgggacaggaagcaagagcaaaagcaaaactaagacaaacactattactcta
gtgggagcaaagaaaaggaagagaaatgcttcctcagaccattctgatggggagttgagt
ccagcctcacctgctacactggaagatgacatgattatgaagaggcgctccaatcgtgtg
gtgaagaggaagaagtacacagaggacctggatatcaagataacagatgatgaggatgag
caggaagatgtagatgttactacgactgcagcagctgtcgcctccatcagtggcagcaca
gcagcacagcttaaacaggaaatggagctggacggtgatgggcagcccaccatgcagttc
tttgtggaaaatccaagtgaagaagatgctgcgattgtggacaaagttctttccatgagg
ttaaccaaaaaagaagtgtgcccaggccagtacaccactgttgaagaattctttgtgaaa
tacaagaactattcatatttacactgtgaatgggccagcttgcaacagttggagaaggat
aagaggatccaccagaagatcaagagattcaagactaaacacgcacaaatgagacacatc
ttccaagaggaggaggagccttttaatcctgactatgttgaagcagacaggatcctagac
gtgtcccatagtgtggacaaggacaacggagagcctgttatctactatttggtgaagtgg
tgctccctgccttatgaagatgccacttgggagctgaaggaggatgtagacgagggcaag
gttgaggagttcggcaaaatccaaaaccgacaacctcgtctgaagaaaatggctcggcct
cctgcaagttcgtggaagaaactggaagagaccagagagtacaagaatgggaacatactc
agagagtaccaactggaaggagtcaactggctgctcttcaactggtacaacaggcagaat
tgtatcctggcagacgagatgggtctgggcaagactatccagtccattgcactgctgtct
gaggtgtataatgctggaatccaaggccccttccttgttattgctccactctccaccatc
actaactgggagagagagttctccacatggaccaacatgaacgccatcgtctaccatggg
agcttggccagccgtcagatgatccagcagtatgagatgtacagcaaggacgacaaggat
catttgattcctggtgcatataagtttgatgccctcatcacaacctttgagatggtgttg
tccgactgtcctgagctgagggaaatctcgtggcgttgtgtcatcattgatgaggctcat
cgcctcaagaatcgcaactgcaagcttttggacagcttgaagatgatggatcaggaacac
aaagtgttattgaccggcactcctcttcagaacactgtggaggaactcttcagtttactc
catttcctggagccagctcagttcccctctgagactgagttcctcagagactttggagac
ctgaaaacagaagaacaggttcagaagctacaggccatcttgaaacctatgatgttaagg
aggctaaaggaggatgttgagaagaacttagcacccaaacaggagaccatcattgaggtt
gagttgactgatgtccagaagaagtattatcgagccatcttggaacgaaacttcagtttc
ctcagtttaggggcaaacagtaacagcaatgtccctaacctgctcaacactatgatggag
ctacgcaagtgctgcaaccacccctacctcatcaatggtgcagaggagaagatagtagcc
gagctgcggcaggtttacgaccccatggctccggacttccatttgcaggccctgattcgc
tcagcaggcaagctggtgctgctggacaagctgctgcctcgcctaaaggctggtggccac
aaagtgctgatcttctctcagatggtgcgctgcttagacattttggaggactacctcatc
aacaaaagatacctttatgagcgtattgatggcagagtgcgtggaaacctgcgccaggct
gccatcgatcgctttagtaaacctgactcagaccgcttcgtcttcctgctgtgtacccga
gctggcggtttgggtattaacctcactgctgctgacacctgtgttatatttgactctgac
tggaaccctcaaaatgacctgcaggcccaagcaaggtgtcatcgtatcggtcaatcgaag
gcagttaaagtctaccgcctgattacaaggaactcctatgagagggagatgctggataaa
gcaagtctgaagcttgggctggaccgtgccgtcctgcagagcatgagtggcaacaaggag
agtaacgtcaatgggatccagcagttctctaagaaggagatagaggacctcctgagaaaa
ggagcgtatgctgccatcatggatgagaatgatgagggcagtcgcttttgtgaggaggat
attgatcagatccttcagcgaagagccaccaccattaccattgagagtgagggcaagggc
tccaccttctccaaggccagctttgtcgcctccgaaaaccgcaatgacatcgccctggac
gaccctgaattctgggagaagtgggcaaagaaggccgacatagatatggacaccatcaac
cgcaagaacacccttgtgatagacactcccagagtacgcaagcagactcgacaattttcc
agtttacgaggcgagggtggagacctgtctgatttggacagtgatgatgagtatccacct
gccaattccagacagtctcgttcttcccgacgcgctgaccgccacagtggaggaggatac
ggccgcacggactgtttccgggtcgagaaacaccttcttgtctatggttggggacgttgg
agagacatcctgtcacatgctagatgtaagcgacgtttgagtgagcgggatgttgagacg
atctgccgtgtcatcctggtcttttgtctgcttcactaccgtggagatgagaacatcaag
agcttcatctgggagctcatcactccgccggagaacgggtgtggaccaacaactctactc
aaccactctggactgtctatccctgttccaagaggcagaaagggtaaaagggtaaaggcc
cagagcacatttgatgttcagaaagtggagtggatccgaaagtacaaccctgacactctt
ttgttggatgagagctaccgcaaacatctcaagcaccagtgcaacaaggtattgctcagg
gtgcgtatgctctactacctgaagcaggaagtgattggcgaacatgcagacgccgttctg
aaaggagctgtcataagggagcttgatatctggatgcctgagatggagcaacaggaagtg
ccagcaggatggtgggattctgaggcagaccgctcactgctctctggtgtattcaaacat
ggttatgaaatgtacaccaccatgcgtgctgatccctgcctctgcttcctggagagagct
ggtcgacctgatgacaaggccattgatgctgagcagcacactggtgacactgagatgggg
gaagatgctgactatgataaatactcagaggacccagagttcaaaccggcctcaaggcac
aaagatcttttcgaggagaatgactcgatgaacgtggatgatgagatttctgttgaggaa
aggtcggggccattggtcacagaaaacttactgagcctgagtggtgcgagcaactggccc
tcaagctcatcactcacagcaaggttacgtcggcttatcacggctttccaacgcagctac
agacaggagcagctgaagattgaagctgaggcaaagggtgaccgcaggcgcaggcggtgt
gaacaagctagtaaactgaaggagattgcacggcaggagcgccagcagagatggacacgt
agagaggagtgtgacttctaccgtgtggtatcgacctttggtgtggtgaagttgaaaaag
gaaccagatttccctgaggccggagaccttgaatttgactggactcgctttcgtaccttt
gctcgcctggataaaaaaactgacgagagtctcagccgatacttccgctcttttgttgcc
atgtgtcggagggtttgccacctccccccaggcagagaagatcctgcagagaattcccag
actgtggcccccatcactgaggagcgtgcttcccgtaccctttaccgtattagccttttg
cgtcgcctgcgtgagcgagtcctgccccacccctccctggaggagcgtctaaccctggcc
ctgccgaactccgagctgcccagttggtggaatataccagaccacgatcgtcagctgatg
cttggtgctaatctgcatggtgtcagccgcactgagctttccatattagcagacccacag
ttcaccttcaatcaggctagggaagagttcatccagaaccagcaggcccctccaccgcaa
ccacttcccatcatgcccctcatccagcccaagactgaagatgacctgccagatgtaaag
gaggaggtagctgatgatgaggcccggttgctaggtgctgaactcttggctgacctgcag
agcacacctttaagtcaccatgatggaaaagtacatggccagggctggaacttcaaaaag
agcagggggaggggaggaagaacggaaggaggaacaaagggagagggaggatctgattca
gattcagattctgattcaggctcctcatcatcagagcaatcagggagcagcgacgaaagc
ggggagagtgaggaagagggagaaaaggcagccaaggtgtgtgatatggatgaagataat
agtttactctccattactccgtctcaggatggtattccacctcctgatcctatcagagtt
gactggcccaaggaccgtgtattgatcaacagactggacaccttgtgtacactggtgctg
actggtcagtggccctcagggcggcggtatgtgcctgaggctcagctcaacccgagctca
gacctgatgggagatgagatggccttcacaaggctgatccgtaaacccagcagcatgact
gctggcccaggggcagaaggagaagatggagagttcacagtcaaactccttaaggaggag
gggctgaagctgacgttctctaagcaggctctgatgcccaatgggtcaggagagagcagc
aaccgcaaaaaacgcaaggaccaagagctgtcagacacagagggtctccttgatccacta
gagcgcactcctcgacggagggaccccccaacatggctgaaagagaacccagattatgag
gtggagggagacatgctggagcttcttgtaaacaggagcaaaaggaagaggaggaggagg
gcaaataaagttctaactggtagcgagaaggttaaagtcatcaacatgaggacagggaag
aaggtcggcgctgctttctgtccaatgctgcaagatctgagggagtatctcgaggagaat
cctgataacgccgtagcgcccgattggtctgacacagttcgcagctctggttttctgccg
gagacccacttccaccgactgctgactgagcactcggacatccctaagaaaagcagacgc
cgccatcatcatcaccatcaccaccaccatcatcatcatcaccacactccagagcctgtt
cctgaagaccccaacctggacggagttgaagaggagactctggtctcagatggagcctac
atgatggatgaggaggacctggagacctctcatcactttctcaccagtccagactttgat
gttaaaatgatgggtggtgacagcatttcccatggtgactatgacagctcggatcaagaa
gcattattggacgatgtcatcatagcacagaaggactctgactcctcatcaagttcagag
gattga
DBGET
integrated database retrieval system
