Solea senegalensis (Senegalese sole): 122775173
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Entry
122775173 CDS
T07721
Symbol
prpf38b
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122775173 (prpf38b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssen03041
]
122775173 (prpf38b)
Spliceosome [BR:
ssen03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122775173 (prpf38b)
Complex C
U4/U6.U5 tri-SnRNP related factors
122775173 (prpf38b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
122775173
NCBI-ProteinID:
XP_043890905
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All DBs
Position
LG1:complement(11043914..11050269)
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AA seq
475 aa
AA seq
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MASVGNQLPTQAVSKSAPGKHGNVLPLWGNEKTMNLNPMILTNVLSSPYFKVQLYELKTY
HEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTR
KQLMGLITHTDSPYIRALGFMYIRYTQPPNDLIDWYDGFLDDEEELDVKAGGGCVMTIGE
MLRSFLTKLEWFSTLFPRIPVPVQKSIDQQMKARPRKIVQKEEVQEEEEEEEEEEEEGAP
AAAAATFADSGKQGERWRSRTPRRTPSPRKSPKRSRSRSHQRERDRHGPSFDRELERERD
RQKKERDGRDRDRDRERRRSRSADRNHDRRERRKSRSGSRERRGERRDKERDGAEDRNKR
KDREHHKDRGTERERSRDKKSRGETDDRRHKDDRERHREERKAKRTSRSRSKERKHKSGE
EKNRKRERSHSRDRDRDGERRSHKRSRSKDKSHHQRETSNDHSKHSERRRSHSTD
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggctagcgtcggaaaccagctgccaacacaggccgttagcaagtctgcgccagggaaa
catggaaatgtactgcccctgtggggcaacgaaaagactatgaacctcaatcccatgatt
ctaaccaatgtgctgtcctctccgtatttcaaagtccagctttacgagctgaagacctac
catgaagttgtggacgaaatctatttcaaggtgactcatgttgagccttgggaaaaggga
agcagaaagactgcaggccagactggaatgtgcggaggggtgcgtggagtcggaactggt
ggtattgtgtctactgctttctgtcttctatacaaactgtttactctcaagttgactcgc
aagcagctgatgggtctgatcactcacacagactcaccgtacatcagagcacttggtttc
atgtacataaggtacactcagcccccaaatgacttaattgactggtacgatgggttcctg
gatgatgaggaggagcttgatgtaaaggcaggaggtggttgtgtgatgaccataggagag
atgctgcgctcattcctaaccaagctggagtggttctctactcttttcccccggatcccc
gtgcctgtgcagaagagtattgaccagcagatgaaggcgaggccacgtaagattgttcag
aaggaggaggtgcaggaagaggaggaggaggaggaggaagaagaagaagaaggagcacca
gcagcagcagcagccacatttgcagattcaggaaagcaaggggaacggtggcgctccagg
acacccagacgaacgcccagcccacgaaagtcgcccaaacggtcaaggagcaggagccac
cagcgtgagcgtgaccgtcacggccccagcttcgaccgagagctggagagggagcgtgat
cgccaaaagaaggagcgagacggcagggaccgagatagggacagagagagacggcgatcc
cgcagcgcagacagaaaccacgaccgacgagaacgtagaaaaagtcgcagtggcagccga
gaacgaagaggcgaacgcagagacaaagagagagatggagcggaagacagaaacaagagg
aaggacagggagcaccataaggatagaggcacagaaagagagaggtccagggataagaaa
agtaggggagaaactgatgacaggaggcacaaggatgacagggagaggcacagagaagag
aggaaggccaaaaggacgagtcggagtcgaagcaaggaaaggaagcacaagagtggagag
gagaagaacaggaaaagagagcgcagccacagcagagatagagacagagatggggaacgg
cgttctcacaaacgtagtcgtagcaaagacaagagtcatcaccagcgcgagaccagtaat
gatcatagtaaacatagtgaacgcagaaggagtcacagcactgactaa
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