Solea senegalensis (Senegalese sole): 122775388
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Entry
122775388 CDS
T07721
Name
(RefSeq) PDZ domain-containing RING finger protein 4-like isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssen04121
]
122775388
Enzymes [BR:
ssen01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122775388
Ubiquitin system [BR:
ssen04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
122775388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
122775388
NCBI-ProteinID:
XP_043891164
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Position
LG10:11802336..11913789
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AA seq
886 aa
AA seq
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MMASQTKPDACHRGEGACCQRGCGLPLSSEDSNKVEQHCCVDALRAVTDALEEKSAALEH
ESRMARLRWNRREQFLLAQVSALQNEAQLAALRYQRRLHQYTLHINGIAEQLVGYCKSDL
KTPADSHTSGKATPAEGESAEGQLTLPEVNGKELSKSNHEETVEAFCSAKEPVVVQVIRR
TPSGRPHGPLQEIHVVDVCTQTDITFEHIMALAKLRPSTPPVPDVCPFLLSDSCHSLHTM
DQDYYEGTDYLSPIPADGERTEEFEYEEVELYRLNSQEKLGLTLCYRTDEEEDVAIYVSE
ISPNSIAAKDGRIREGDRILQINGQDVQDREEAMAALSSDECRNIVLLVARPEMQLEEAW
LDDEHSEFLEQLKMEMLEEQQREEMELAALQEEQENEQTAEDEKPTCSTLPHHKNSVLSI
KDRMESSENNVLAHIQRRLSQCLRDSRDTHCTIGSTRLEDKEDEDDDEMEGDRFQQLLEL
KCQIRNSGEYDLFYSRRSTIECSKVEQGGVQHELRMLNEELRSIELECQNIMQAHKLRKG
QESGRSPPSTKNQSLLHGNPTRGKLTDVNERLEKSDKDSSSAYNTAESSRSTPLAMDRSP
EHSLQRMVSLTNQKNLCSSLATAHSLSLSPIPACHAPVPGKSSSPDHSNPSESDHTTQAE
DASRGTLKRTHACQIPYFSPSHSSQQRQTNIPAHARHYQSYMQLIQQRSAVEYAQSQLSL
LSVCKEPQRPLHEPKMEWKVKIRSDGTRYITKRPVRDKILKERALKIKEERSGGMTTDDD
AMSEMKMGRYWSKEERKQHLVRAKEQRKRREFMQRSRLESLKENPQSSSEGRKEVSIIEL
SHKKMMKKRNKKILDNWMTIQELMTHGTKAPEGAKVHNAFLSVTTV
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgatggcgtcgcaaacgaagccagacgcgtgtcaccgaggtgaaggcgcctgttgtcag
agaggatgcggactcccgctgtcctctgaagactccaacaaagtggagcagcactgctgc
gtggacgcgctccgtgccgtcaccgacgcgctggaggagaaaagcgccgctttggagcat
gaatcccggatggcgaggctcaggtggaacaggagggagcagttcctgttggcccaggtg
tccgcgctacagaacgaggcgcagctcgctgccctcaggtaccagcgcagactgcaccag
tacacgctgcacatcaacggcatcgcagagcagctcgttggatactgcaagagtgactta
aagacacccgctgacagccacacatcaggcaaagcaacacctgcagagggggagtcagcg
gagggacagctcaccctacctgaggtaaacggaaaggagctgtccaagtccaaccatgag
gagacagtggaggccttttgcagtgccaaggaacccgtcgtggtgcaggtcatcaggcgg
acccccagcggcagaccccatggcccccttcaggaaatccacgtggtggacgtgtgcact
cagaccgacatcaccttcgaacacatcatggcgctggcaaagctgcgcccttcgacccct
cccgtgcctgacgtctgtcccttccttctctctgacagctgtcattctcttcatacaatg
gaccaggattactatgaagggacggactacctctcccccattcctgctgatggagagagg
acagaagagtttgagtatgaggaagtggaactttatcgactcaacagccaagagaagttg
ggcttgactctgtgctacaggacggacgaggaggaggatgtagccatctatgtcagcgag
atcagtccaaacagcattgcagccaaagatggacgcatccgagagggcgatcgcatctta
cagattaatggccaagatgttcaagacagagaagaagcaatggctgcgctctccagcgac
gagtgtcggaacatcgtactgctggttgccagacctgagatgcagctggaggaggcctgg
ctggatgatgagcacagtgagttcctggagcagctgaagatggaaatgttggaggagcag
cagagagaggagatggaattagctgccttgcaggaagaacaggagaatgaacagacagcc
gaggatgagaagcccacctgctccacactccctcatcacaagaacagcgtgttgagtatt
aaagacagaatggaaagctcagaaaataacgtcctggcgcacatccagagacgcctgtcc
cagtgcctgagagacagtcgggacacacattgtaccattggctccacgcggctggaggac
aaagaggacgaggacgatgatgagatggaaggtgatcgatttcagcagctcttggagctg
aagtgtcagattcgtaacagtggcgagtacgatctgttctacagccgccgcagcaccatt
gagtgcagcaaggtggagcagggcggcgtacaacacgagctgcgcatgctcaacgaggag
ctgcgcagcatcgagctcgaatgtcagaacatcatgcaggcccacaagcttcggaaaggt
caggaatcaggccgctctcctccctccaccaaaaaccaaagcctcctccatggcaacccc
acacggggaaagttgacagatgttaatgagaggctggagaaatcagacaaggacagctcc
agtgcctataacacagcagagagctcacgcagtacgcctctggcaatggaccgctctccg
gagcactcactccagaggatggtgagtctcaccaaccagaagaacctctgtagcagccta
gccactgcccattctcttagcctgagccctatcccagcatgccatgctccggtcccaggc
aagagcagcagccctgaccacagcaatccatctgagtccgaccacacaactcaggccgag
gacgcgagcagagggacattaaaaaggacacatgcttgccagattccctatttctccccg
tcccacagttcccagcaaagacagacaaacattccagctcacgcccgccactaccagagc
tacatgcagctgatccagcagcgctcagctgtcgagtacgctcagagccagctcagcctg
ctcagtgtgtgcaaagagcctcagaggccccttcatgagcccaagatggagtggaaggtc
aagatccgcagcgacggcacccgctacatcaccaagagacctgtgagagacaagatcctg
aaggagcgagccctgaagattaaagaagagcggagcggggggatgaccacggacgacgac
gcaatgagtgaaatgaagatgggacggtactggagtaaagaggaacgaaagcagcacctg
gtcagagcaaaagaacagaggaaaagacgggagttcatgcagcgcagtcgtctggagagt
ttgaaggagaatccgcagagcagcagcgagggtcgcaaggaagtcagcatcatcgagctc
agccacaagaagatgatgaagaaacgcaacaagaaaatccttgacaactggatgacgatc
caggagctgatgactcacgggactaaagccccagagggagccaaggtgcacaatgccttc
ctatcagtcactactgtataa
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