Solea senegalensis (Senegalese sole): 122775572
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Entry
122775572 CDS
T07721
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122775572 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122775572 (cnot1)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122775572 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122775572 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
122775572
NCBI-ProteinID:
XP_043891482
LinkDB
All DBs
Position
LG10:complement(1712660..1734748)
Genome browser
AA seq
2389 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASVDECRNIILQYGVREVTAIQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQVHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLQIVVYGIQRGLGIEVFPVDLIYRPWKHAEGQLSFIQHSLMNPEMFC
FADYACHTVATDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LNDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLICLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDPLSGMSSL
NLGGTATSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLTNPNPSTPFGGIGSLSSQLPGMD
SGPLVSGIGSSLGMPTVSTDPFGTRKMSTPGLNPPTFQQSKMKASDLSQVWPEANQHFSK
EIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSSIKREREVFNCMLRNLFEEYRFF
PQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDKFK
NRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSLALAQ
VQSQSHQPVGPKAPQPGQPSTLVTTTTTTTTVAKTSTITRPTPSTFKKDVPPSINTTNID
TLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVM
KRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLG
HWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRPQN
PWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLKNLEEQL
SAPKKEAKPPEELLPVSTTGDFVPFAAPPSTPAATTTTCTTTGPPTPQFSYHDINVYALA
GLAPHININVNIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKDF
ALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFGAALRAPTPQQREMM
EEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTY
QAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWATDD
VAQIYDKCMADLEQHLHAIPPALAMNPLTQALRSLLEAVALARNSRDGIAALGLLQKAVE
GLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEA
VELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLFHT
IETLMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPG
LREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCV
EISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVL
GIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILR
PTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKP
MQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFT
PNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPG
NRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFL
NAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFI
ELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7170 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgattcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acgaagaaaaactatcgagccagccagcaagaaatacaacatattgtaaatcgtcacggt
cctgaggcagacaggcatctactacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcaaagccaaactttatctctactttgtgctacgccattgacaatcccctgcac
tatcagaagagtttgaagccgtcggcccacctattcactcaactgagtaaagttcttaaa
ctcagcaaggtccaagaggtgatatttggacttgctttgctcaattccagcaacacagac
ctccgtggctttgctgcacagttcatcaagcagaagcttccagatctcttgcggtcttac
gtcgacgctgatcttggaggaaaccaggaaggtggcttccaagacattgccatagaggtc
ttgcacctactgctctcccatctactgtttggccagaagggagccagtggggtaggccag
gagcagattgacgccttcctcaagacactttgccgagatttcccccaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggattcta
ccagactcaggggagttagctaagaccatgatggagagttctcttgcagagttcatgcaa
gaagttggctatggcttctgtgctagtgtggacgagtgcagaaatattatcctgcagtat
ggggtgagggaggtgacagccatccaggtagccagggtcctgggcatgatggctcgtacc
cactctggcctgacagatggtatcccactacagtccatctctgctccaggaagtggcatc
tggagtgatggcaaggataaaaacgatggctcgcaggttcacacatggaatgttgaggtt
ctgattgacgtcgtcaaagaagtgaatcccaacttgaacttcaaagaggtgacgtatgaa
ctggaccacccgggctttataatccgggacagtaaaggactgcaaatagtggtgtatggc
attcagaggggactgggcatcgaggtcttccccgtcgatctcatctatcggccatggaag
cacgcagagggacagctgtcattcattcagcactccctgatgaacccagaaatgttctgt
tttgccgattacgcctgccacacagtggccaccgacatcctgaaggccccaccagaggac
gacaaccgggagattgccacctggaaaagcctggacctggtggagagcctgcttcgactc
tctgaggtgggacagtacgagcaggtgaagcagctgttcagcttcccgatcaaacactgc
ccagacatgttggtgttggccttactgcagatctccacatcctggcacacactgcgccat
gagctcatctcaaccctaatgcccatcttcctgggcaatcaccccaactctgccattatc
ctgcactacgcctggcatggacagggacaatctccctctatccgtcagctcataatgcac
tcaatggcagagtggtacatgagaggggagcagtatgaccaagccaagctgtcacgcatc
ctggatgtggcccaggacttgaagtctttatcgatgctgctgaatggtacgccgtttgcc
tttgttattgacctcgctgcactcgcctctcgccgtgaatacctcaaacttgataaatgg
ctgaatgacaaaatcagagagcatggggaaccttttatccaagcgtgtgtaacattcctg
aagaggcgctgcccgtccattatggggggtctggccccagacaaggaccagcccaaaagt
gcccagctgccgccagagaccttggccaccatgctgatatgtctgcagtcatgtgctggg
agtgtgtcccaggagttgtcggagacgatcctgaccatggttgccaactgcagcaatgtg
atgaacaaagctcgacagccgccaccaggagtgatgccgaagggtcgtgcccccagcacc
agcagcctggatgccatttcacctgtacagatggaccctctgtccggcatgagttccttg
aatttggggggcactgccacctcccacactcagagcatgcagggtttcccaacctcactg
agttcagcttttagtaatccccagtctccagcaaaggcttttccaccactcacaaaccca
aaccccagcaccccgtttgggggcattggcagcctgtcctcgcagcttcctggtatggac
tctggtccattggtctctggtattggctccagcctgggaatgccaacagtcagcactgac
ccctttggcaccaggaagatgagcacacccggcctgaatccaccgacctttcagcagagt
aagatgaaggcctctgatctttctcaggtgtggccagaggcaaaccagcactttagtaag
gagatagacgacgaagcaaacagttacttccaacgcatctacaaccacccacctcaccca
actatgtccgtcgatgaagtattggagatgctgcagcggttcaaggattcatccattaag
cgggaacgagaggtgttcaattgcatgctgaggaatttgtttgaggaataccggttcttc
ccccagtacccagacaaggagctgcacatcactgcctgcctttttggtggaattattgag
aagggtctcgtcacctacatggccctaggtttggctctgcgatacgtcctcgaagcctta
agaaaaccctttggatcaaaaatgtattactttggaattgcggccctagataagttcaag
aacagactaaaggactacccacagtattgtcagcacctggcttcaattgcccacttcttg
cagttcccccaccatttacaagagtgtgtgcagtatatcgagtatggccaacagtcacgg
gaccctccggtgaagatgcaagggtccatcactacgcctggaagcctggctttggcacag
gtgcagtcccagtcgcatcaacccgtgggtcccaaagcgccgcagcctggtcagcccagc
accctcgtcaccaccaccaccacgacaaccacagtagccaagacctccaccatcacaaga
ccaacacccagcaccttcaagaaggatgtacctccttccattaacactaccaacattgac
accctgctggtggccactgaccaaacggaaaggattgtggagcctccagagaatgttcag
gagaagatagcgttcatctttaacaacctttctcagtccaacatgacacagaaggttgag
gagttgaaagagactgtgaaggaggagtttatgccgtgggtgtctcagtacctggtgatg
aagcgtgtcagcattgagcccaacttccatagtctctactccaacttcctggacactctc
aagaacccagagtttgtcaagatggttctcaacgagacttacagaaacatcaaggtgctc
ttgacgtcagacaaagctgctgccaatttctctgatcgctctctgctgaagaacctgggc
cactggctgggcatgattacactggccaaaaacaagcctatcctctatacagacctggaa
gtcaagtctttgctactggaagcctatgtgaaaggtcagcaggagttgctgtacgtggtt
ccctttgtggccaaagttttggagtcaagtctacgcagcatggttttcaggccccagaat
ccctggactatggccatcatgaatgtccttgctgagcttcaccaggaacatgacctcaag
ctgaacttgaagtttgagattgaagttctgtgtaagaacttgtccttggacatcaatgac
ctcaagccaggaaccctgctgaaggacaaggataagctaaagaacctggaggaacaactt
tctgcaccaaagaaggaggcaaagccaccggaagagctgctaccagtctctaccacagga
gactttgttccatttgcagctcctccctcaaccccagctgccaccaccaccacatgcaca
accacggggcctccgacaccacagttcagttaccatgacatcaatgtgtacgctttggca
ggcctggctcctcacatcaacatcaatgtcaatatacccctgctgcaggctcaccctcaa
ttgaagcagtgcgttcggcagtcggtagagcgagccgttcaggagctggttcatcctgtg
gtggaccgctccatcaagattgccatgacgacctgtgagcagatcatcaggaaggacttt
gccctggattcagaggagtcgcgcatgcgcgtcgctgcccaccacatgatgaggaacctg
accgctggcatggccatgatcacctgccgtgagccgctgctcatgagcatcgccaccaat
ctgaagaacagctttggtgctgctctgagggcgccgacgccccaacagagggaaatgatg
gaggaggccgcagcccgcatcgctcaagacaactgtgaattagcttgctgcttcattcag
aaaacagccgtggagaaggctggtcctgaaatggacaagagactggccacggagtttgag
ctgagaaagcatgcacgccaagagggaaggcgttactgtgatcccgttgttctgacgtac
caggccgagcgtatgcccgagcagatcagactcaaggtgggaggagtggaccccaaacaa
ctggccgtatatgaggagtttgccaggaatgttccaggtttcctacccagtaatgatctc
tcacaacccactggcttcttagctcagcccatgaagcaacaagcgtgggccacagatgac
gtggctcagatctacgataagtgcatggccgacctggagcaacatctacatgccatccct
cccgctcttgcgatgaaccctttgacccaggcattgcgcagcctgctggaggccgtggct
ttggctagaaactccagggacggcatcgccgcacttggcctgctgcagaaggctgtggaa
ggtcttctggatgctaccagtggtgctgatgccgacttgctgctccgctacagagaatgt
cacctgctggtgctgaaagctctgcaggacggccgtgcctatggaccacagtggtgcaat
aagcagatcaccaggtgtctgattgaatgccgtgatgagtacaaatacaacgtggaggca
gtggagcttctgatcaggaaccatcttgtgaacatgcagcagtatgatctgcacctggca
cagtcgatggagaatggattgcactacatggcagttgcgtttgccatgcagctggtgaaa
ctgctgctcgtggatgagcgcagtgtcagtcacgtgactgaggccgacctgtttcacaca
atcgagactttaatgaggacttgtgcacactccagagccaacgcaccagagggtcttcct
cagctcatggacgttgttcgctccaactatgaagccatgattgaccgggcccacggcgga
cccaactttatgatgcactctgggatctcacaggcttcagaatatgacgatcctccaggc
ctgcgggagaaggcagagtacctgttgagggaatgggtgaacctgtatcactcagctgct
gctggcagagacagcaccaaagccttctctgcctttgttggccagatgcaccagcagggc
atcttgaagacggacgacctgatcacaaggttcttccggctgtgcacagagatgtgtgtg
gagataagctatcgcgctcaggctgagcagcagcacaacccagcagccagtgctgccatc
atcagagccaagtgttaccacaacctggacgcttttgtccggctcatagctctgctggtc
aagcactctggagaggccaccaacacggtgacgaaaatcaacctcctcaacaaggtgctg
ggtatcgtagttggggtgttgatccaggaccatgacgtccgtcagacagaatttcagcag
cttccgtaccaccgcattttcatcatgctgctgctggagctcaacgctcctgaacacgtt
ctggagaccatcaacttccagacgctcaccgcgttctgcaataccttccacatcctgagg
cccactaaagcacctggctttgtttacgcctggctggagctcatctcccatcgcatcttt
attgccaggatgcttgcacacaccccacagcagaagggttggcccatgtacgcacagctg
ctgattgatctcttcaagtacctggcccctttcctgaggaatgtagagctcaacaaacct
atgcaaatcctctacaagggtacactgcgggtgcttctggtcctgctgcacgacttccca
gaattcctgtgcgactatcattacggcttctgcgatgtcattccacccaactgcatccag
ctccgcaacctcatcctcagtgccttcccacgcaacatgaggcttcctgatcctttcaca
cccaatctcaaggtggacatgctgagtgagatcaacatcgctcctcgtatcctcaccaac
ttcaccggtgtcatgccgtctcagttcaagaaggatctggactcgtacctgaagacacga
tcaccagtcactttcctgtcagagctgcgcagcaacctgcaggtgtcaaatgagccagga
aatcggtacaacatccagctgatcaacgctctagtgctgtacgtaggcacgcaggccatc
gctcacatccacaacaagggcagcaccccctccatgagcaccatcactcactctgcacac
atggacatcttccagaacctggctgtggacctggacaccgagggacgttacctgttcttg
aatgcgatagccaatcaattgcgctacccgaacagccacacccactacttcagctgcacc
atgctgtatctgtttgctgaggccaacactgaggccattcaggagcagatcaccagggtt
ctgttggagaggctgatcgtgaacaggccacacccatggggtctcctcatcaccttcatc
gagctgattaagaatcctgccttcaagttctggagtcacgactttgtccactgtgccccc
gagattgaaaagctattccagtctgtggcccagtgctgtatgggacagaaacaggcccag
caggtgatggagggcaccggtgccagttag
DBGET
integrated database retrieval system
