Solea senegalensis (Senegalese sole): 122776050
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Entry
122776050 CDS
T07721
Symbol
cnot4a
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122776050 (cnot4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssen03000
]
122776050 (cnot4a)
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122776050 (cnot4a)
04121 Ubiquitin system [BR:
ssen04121
]
122776050 (cnot4a)
Enzymes [BR:
ssen01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122776050 (cnot4a)
Transcription factors [BR:
ssen03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
122776050 (cnot4a)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122776050 (cnot4a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122776050 (cnot4a)
Ubiquitin system [BR:
ssen04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122776050 (cnot4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
Med7
DZR_2
Rtf2
RDD1
zf-CCCH_2
zf-C3HC4
Torus
Motif
Other DBs
NCBI-GeneID:
122776050
NCBI-ProteinID:
XP_043892325
LinkDB
All DBs
Position
LG10:complement(11550365..11564938)
Genome browser
AA seq
796 aa
AA seq
DB search
MSHSPELKDDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKINPSFLQPPACGTEKSKSKSNSTQRSNSNGKDGWPTLSGHNKLANGLSEDRKSP
PLLDYLDQEVITSDGLDTELGPGQHTALSPFSSNCDSTSPSDKPPESISLVNGETLQQIP
TSDSPSPPPGLTKPSLVVPISVSDLTARSPFEGAAAESQSLFSDNSNFRHPNPLPAGLPP
FPSSPRGSSDWPMTPEPQSLFTSDTIPVSSSTDWQAAFGFGSSSKQQDDDLGFDPFDVTR
KALADLIEKELSVQDQSPTSPGPLPMGHNHGPCLPPPNPSTTSHHFPSGLPRLPHLHHRP
IYSSFSFPGSQNSQASQQQPAVRHPWMGIPTRNNLTHLNHSAGAASHSNFLDLNLPPQHN
TGLGGIPISENSGSIDGLNVKEWQDGLRALLPNININFGGLPSSSSSSSSSSSNSVNHIG
GPTGPAGIPHSLSWDGTASWMDPAIITGIPATAGNSLDCLQDDNPPHWLKSLQALTEMDG
PASSAVPTPQPLHSGLLDAHLPLHHRAAGGWAPYLPPPTVNPASQFHSPPPGFQTAFRPP
GQPSTELLQSAAVDRH
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacagccctgaattgaaggacgaccccatggagtgccctctgtgcatggagcca
ctggagattgatgatgtcaacttcttcccctgcacttgtggctaccagatctgccgcttc
tgttggcatcgcatccgcacagatgagaatggcctgtgccctgcctgcagaaagccgtac
ccagaggacccggctgtgtacaagcctctgtcacaggaggagatccaaaggataaaaaat
gaaaagaagcaaaaacagaatgagaagaagcagaaggtgacagaaaaccgcaaacatctg
gccagtgtcagagtggtccagagaaatctggtgtttgtggtggggctgtcgcagcgactc
gccgacccggaggtcctaaaacgaccagaatattttgggaggtttgggaaaatccataaa
gtggtcattaacaatagcacatcttatgcaggttcacaggggcctagtgctagcgcttat
gtcacttacatccgctctgaagatgctctaagagcaatacagtgtgtgaacaatgtggtt
gttgatggcagaacactcaaggcttctttaggcacaacaaagtactgcagttactttctt
aaaagtatgcagtgtcccaaacctgattgtatgtatctacacgagctgggggatgaagcc
gctagctttactaaagaggagatgcaggcgggaaaacatcaagagtatgagcagaaactc
ctccaagacctctataaaattaaccctagctttctacaacctcctgcatgtggtacagag
aagtcaaagagtaaatccaactccacacaaagatccaatagcaatggtaaagatgggtgg
ccaacgctgtcggggcataacaaactggccaatgggctttcagaggaccgcaagtcccct
ccactcctcgactatctagaccaagaagttatcacttcagatgggctggatacagagctg
ggccctggtcaacacactgccctgtcccccttctcctccaactgtgacagtaccagtccc
agtgacaaacctccagagtcgatcagtttggtgaatggagagactttacaacagataccc
accagtgactccccctcccctcctccaggtttaactaaacccagcctggtggtgcccatc
agtgtgtcagacctcacagcacgttcaccctttgagggtgcagcagctgagtcccagtca
ctcttttcagacaacagtaacttcagacatcctaaccctctccctgcaggcctaccccct
ttccccagctccccccgtggcagctctgactggcccatgacccctgaaccacagagcctc
ttcacatcagacacaataccagtgtcatcttccacagactggcaagcggcgtttggcttt
ggctcgtccagcaaacagcaggacgacgacctaggcttcgatcctttcgacgtcacccga
aaggctttggctgacctgatagagaaggagctgtctgtgcaggatcagagtcccacatcc
ccagggcctttgcccatggggcacaaccacggtccctgcctgccaccccccaacccaagc
accacctctcaccacttcccaagtggcctaccacgcctcccccatctccaccacagaccc
atctatagctccttcagtttccccggcagtcagaacagccaggccagtcagcagcagcca
gctgtgagacacccctggatgggcatccccacacgaaataacctcacacacttgaaccac
tcagccggtgctgcctcacacagtaatttcctggacctgaatctgccccctcagcacaac
acagggctcggagggatccccatttcagaaaacagtggttctatagacggcctaaatgtg
aaagagtggcaggatggcctgagagctctcctacccaacatcaatattaactttgggggt
ctcccaagctcctcttcctcttcatcctcctcatcctccaacagtgttaaccacattggt
gggccgacagggcctgcaggaatcccacacagtctgagctgggatggcacagcaagttgg
atggaccctgctatcatcacaggcatcccagccacggcgggcaacagtttagactgtctt
caagacgacaacccaccacattggcttaagtcactgcaggccctcacagagatggacggc
ccagccagttcagcagtgcccacaccccagcccctccacagtggcctcctcgacgcccat
ctccctctccatcacagagccgcaggtggctgggctccttacctcccccctcccacagtc
aaccccgccagccagttccactccccccctccaggcttccagaccgccttcagaccccca
ggacagccctccacagagctgctacagagtgctgctgtggaccgccactga
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