Solea senegalensis (Senegalese sole): 122777043
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Entry
122777043 CDS
T07721
Symbol
pan2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122777043 (pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122777043 (pan2)
Enzymes [BR:
ssen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122777043 (pan2)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122777043 (pan2)
mRNA degradation factors
3'-5' decay
Pan complex
122777043 (pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
WD40_like
Motif
Other DBs
NCBI-GeneID:
122777043
NCBI-ProteinID:
XP_043893918
LinkDB
All DBs
Position
LG11:4704556..4717240
Genome browser
AA seq
1208 aa
AA seq
DB search
MMNFDGLDAGMGDYPPSLHGTLESSMEPSMDPHLNPSLLQGVELDPDGLTVTVPESVHLM
EGMFSELHSAVSEVGIPVTATHFDVQEEMLWMGNHRGHATSFFGPTMGRFSSFQVHGTDD
IRHIQSLETGVLFLSKCNLKCYTRGGLVMFDYPMDEGADMHSLLVTDNNTLVMGGLQNYV
SEVDLNTVQETQKFTVELPGVAIMRQTSRFFFCGHTSGKITLRDLRSFKMEQEFDAFSGS
LSDFDVHGNLLAACGFSSRGLNGLACDRFLMVYDLRMMRAVTPLQVHVDPLFLRFIPTYT
SRLAIISQTGQCQFCEPTGLANVADIFHVNTVGQLLMSFDVSSSKQALAFGDSGGCVHLW
SDAPEVSFNDYSRETDFPLPCLVETLPQLDWNHDLLPLSLLPTPLTSTEPLLSDWSSVMS
TPSPRRAPPVDPEILRTMKTVGFIGYAANPRTRPRNQVPYKIKDVELDYDNYNQVPESPI
GRDEEPHLYMVPKKYRKVTIKYSKLGLEDFDFKHYNRTLFAGLEPHIPNAYCNCMIQVLY
FLEPIRCLVQNHLCQKEFCLACELGFLFHMLDLSRGDPCQASNFLRAFRTIPEASALGLI
LADSDEQTGKARLGRLIQSWNRFILTQLHQETQEQEGPQAYRGASSSSLGSSGESAIGKL
FGCEVENSSLCRCGKETVRSSLTLLFNMHYPEQNSQEKTIKEYEFAEILKKSICLEQSTQ
AWCENCEKYQPTVQTRNIRCLPDVLVINCEVNSVKEAEFWKVQVEYAVNKALQKEANEPA
KPKEAPPMPTEWCLDGEDFCSMEGFDPRAEDLRNVWIPLTLKMSISKSQGLEISSWPEGE
ELSAAEEAEGAALYDLVVTVSHIQDTRTGGNLVAHIKVGETYHQRKEGVTHQQWYLFNDF
LIEPIDKAEAAQIDVSWKVPAILYYSRRNYHTKYDLRIKNPIDASVLLTEASLARKQRKS
HATFIPLMVSEMPQAGDLVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCVRGQ
GPNEGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDTG
VRFVGHGLQKDFRVINLLVLKDQVIDTVYLFHLPRKRMISLRFLAWYFLDLNIQGETHDS
IEDARTALQLYRKYLELSRGGGNDEVRKVLKGLYEKGRQQDWKVPDTDTGDGQGSPKSAA
VFPSVMGL
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgatgaactttgacggtcttgatgctgggatgggtgattaccctcccagtcttcatggg
acgctggagtcgagtatggagccttccatggatccacaccttaaccccagcctcctgcag
ggtgtggagcttgatccagacggattgaccgtgacagtccctgagtcagtgcatctcatg
gaggggatgttttctgagcttcacagtgccgtttcagaagttggcatcccagtcactgca
acacattttgatgtacaggaggaaatgctctggatgggaaaccacagaggccatgcgact
tcgttctttgggccaacaatgggcaggttctcgtctttccaagtgcatggaacagacgac
atcagacacattcagagtttggaaacaggtgtgctgttcctctctaagtgcaacctcaaa
tgctacacacgtggaggccttgtcatgttcgattatccgatggatgaaggagctgatatg
catagtctccttgtgactgacaacaacacattggtcatgggaggacttcaaaactatgtg
tctgaggttgacttgaatacagttcaagaaactcaaaagttcactgttgaattaccagga
gtggcaataatgcgtcaaaccagccgtttcttcttctgcggacacacgtctggcaagata
accctcagggatttgcgcagtttcaaaatggagcaggagtttgatgcattctctggcagc
ctctcagactttgacgttcatggaaatcttttggctgcatgcgggttctccagtcgggga
ctgaatgggttggcatgcgaccgttttctcatggtgtatgacctccgtatgatgcgagcc
gtgactccacttcaggtgcacgtggaccccctcttcttgcgcttcattcctacctacaca
tcacgcctggcaattatctcacagacaggccagtgccagttctgtgaacccactggtctc
gccaatgtggcagacatttttcacgtcaacactgtgggccagttgctcatgagttttgac
gtctcatccagcaagcaagcattggcctttggggactctgggggctgtgtgcatctgtgg
tccgacgctcctgaagtttcattcaatgattattcccgggagacagacttccctctgcct
tgccttgtggaaacactgcctcagctcgattggaaccacgacctgctgcccctctcactc
ttacccacgccactgaccagcactgagccactgctgtcagactggtcctctgtcatgtct
acacctagtcccagacgagcccctcctgtggacccagaaatcctgcgcacaatgaaaact
gttggcttcatcggttacgcggccaatcctcgcacccgacctcgcaaccaggttccttat
aaaattaaagatgttgagctggattatgataactacaatcaagtccctgaatcaccaatc
ggacgtgatgaggagccacatctctacatggtgcccaaaaagtatagaaaggtcacaatt
aaatactccaaacttggacttgaggactttgacttcaaacattacaacagaaccttgttc
gctggtctggagcctcacatccccaacgcttactgtaactgcatgatccaggtgttatat
ttcctggagccaatccggtgtctagtgcagaaccatttgtgccagaaagagttctgtttg
gcctgtgagctcggtttcctcttccacatgttggatttgtcacgaggagatccatgccag
gccagtaacttcctccgagcatttcgcaccattcctgaagcgtctgcactaggcctgatc
ctcgctgactcggacgagcaaacgggcaaagccagacttggtcgcttgatccaaagctgg
aaccgattcatcctcacccagctccaccaggagactcaggagcaagaaggaccgcaggcc
tacagaggagccagcagcagttctctgggctcctctggtgagtctgccattggaaaactg
tttgggtgtgaagtggagaacagcagcctgtgtcgctgtggcaaggagacggtccgttct
tccctcacgttgctcttcaacatgcattaccctgaacaaaactctcaggaaaaaactata
aaggagtatgaatttgctgagatcctgaagaagagcatttgcctggagcagagcactcag
gcctggtgtgaaaactgtgaaaagtatcagcccacagtgcaaacacgcaacattcgatgt
ctaccagatgttctggttataaactgtgaggtgaacagtgtgaaagaggccgagttctgg
aaggtgcaggtggagtatgccgtcaataaggccctgcagaaagaggcgaacgaacctgca
aaacccaaggaagccccaccgatgcctactgagtggtgtttggatggtgaggacttctgc
agtatggagggctttgaccctcgggccgaggatttgcgaaatgtctggattcctctcact
ctcaagatgtccatcagcaaaagtcaggggctggagatcagcagctggcccgagggcgaa
gagttaagtgctgctgaggaggcggagggtgctgctctgtatgacttagtggtgactgtg
tcccacatccaggacactcgcacgggtggaaacttggtcgcccacattaaagtgggagag
acttaccatcaaaggaaagagggagtcacacaccagcagtggtacctctttaatgatttc
ttaattgagccaattgacaaggctgaagctgcacaaattgatgtgagctggaaagtgcca
gccattctctattattccaggaggaattaccataccaaatacgacctccgcattaaaaac
cccatcgacgccagtgtgctgctgactgaagcttcactggcgcgaaagcagaggaagagt
cacgccactttcatccccctcatggtcagtgagatgccgcaggctggagacttggtggga
ctggacgccgagtttgttacactcaatcaggaagaggcggaactgcgcagtgacggcacc
aagtcgaccatcaagcccagtcagatgtcagtggccaggatcacttgtgtgagaggtcag
ggccccaacgagggggttcccttcatcgacgactacatctctactcaggaacaagtcgtc
gactacctcactcaatattctggaatcaaacccggagacctggatgcaaagatttcctca
aagcacttgaccactctgaagtccacctacctaaagctgcgcttcctcatcgacacgggt
gttcgatttgtcggtcatggcttacagaaggactttcgggtcattaatttattggttctc
aaagaccaagtcatcgacaccgtctacctgttccatttgcctcgcaaaaggatgatttct
ctccgatttctggcctggtactttttagacctgaacatacagggggaaacccacgacagc
atagaggatgcacgcaccgccctgcagctgtacaggaagtacctggagctgagccgtgga
ggcgggaacgacgaagtcaggaaggtgctgaagggactctatgaaaaaggtcgtcagcag
gactggaaagtcccagacacggacaccggagatggtcaaggtagcccaaaaagtgctgct
gtgtttccctctgtgatggggctgtga
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integrated database retrieval system
