Solea senegalensis (Senegalese sole): 122777439
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Entry
122777439 CDS
T07721
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen04510
Focal adhesion
ssen04512
ECM-receptor interaction
ssen04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122777439 (col2a1a)
04518 Integrin signaling
122777439 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122777439 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssen00536
]
122777439 (col2a1a)
Glycosaminoglycan binding proteins [BR:
ssen00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122777439 (col2a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
122777439
NCBI-ProteinID:
XP_043894619
LinkDB
All DBs
Position
LG11:4429027..4451122
Genome browser
AA seq
1487 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSVVRCQEEDDQEAGDCIQDGQQYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPIIPSGECCPICPADASAHIESLGAKGQKGEPGEIADVVG
PKGPPGPMGPSGEQGPRGEAGAKGDKGNPGPRGRDGEPGTPGNPGPAGPPGPPGLGGNFA
AQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGGPGEAGEPGPAGPVG
PRGPSGPSGKPGSDGESGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ENGAAGAKGESGSSGENGAPGPMGPRGLPGERGRPGAAGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGAKGEAGPTGVRGAEGPQGPRGEGGTPGSPGPAGASGNPGTDGIPGAKG
SAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPAGPQG
PPGPSGEEGKRGARGEPGTAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVSGAGG
PKGASGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPLGARGQPG
VMGFPGPKGANGEPGKPGEKGLVGRPGLRGLSGKDGETGAAGPHGPAGPAGERGEQGQPG
PPGFQGLPGPSGAPGENGKPGDQGVPGEGGAPGAVGARGERGFPGERGGAGPQGLQGPRG
LPGTAGTDGPKGAIGPAGALGSQGPPGLQGMPGERGAGGIPGPKGDRGDNGQKGLEGAPG
KDGSRGLTGPIGPPGPSGPNGAKGETGPGGPSGAPGSRGAPGDRGEVGPPGPAGFAGPPG
ADGQPGAKGELGEAGQKGEGGSPGPQGPSGAPGPVGPTGVSGLKGARGAQGAAGATGFPG
AAGRVGAPGPNGNPGPVGPSGPAGKDGPKGIRGDAGPPGRSGDPGLRGPSGQQGEKGEPG
APGEPGKDGPFGPAGLIGSRGPVGLPGQRGERGFPGLPGPSGEPGKQGASGSGGDRGPPG
PVGPPGITGPAGDTGREGTPGSDGPPGRDGAAGVKGERGNTGPAGAPGAPGAPGVPGPLG
PLGKQGDRGEAGAQGPAGPSGPAGARGMAGPQGPRGDKGEAGEAGERGQKGHRGFTGLQG
LPGPPGPSGDSGTTGPAGPSGAKGPAGPTGPAGKDGSNGQPGPIGPSGPRGRSGETGPAG
PRGNDGPPGPPGPPGPGIDMSAFAGLGQTEKSSDPLRYMRADEASSSLRQHDVEVDSTLK
TLNSQIENLRSPDGSQKNPARSCMDLKLCHPEWRSGDYWVDPNLGSTADAIKVFCNMESG
ETCVYPSITKIPKKNWWTSKSKDRKHIWFGETMRGGFQFSYAQEGPVANTASIQLTFLRL
LSTEATQNFTYHCKNSIAYMDQTTGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDGCKK
HTGQWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcaaggactgttctgctacttgtagcatcccaggttgtttta
ctatccgtggtcagatgtcaggaagaggacgaccaggaggcaggtgactgcatccaggac
ggccagcagtataatgataaggatgtgtggaagccagagccgtgtcgcatctgtgtttgt
gacagcggagcagttctgtgtgatgagataatctgcgaggagatcaaagagtgtgccaac
cctatcatcccatctggagaatgctgtcccatctgccctgctgatgccagtgcgcacatt
gagtcacttggtgctaagggccagaaaggtgaaccaggagagattgccgatgttgtagga
ccaaaaggaccacctgggccaatgggcccatcaggtgagcagggaccacgtggagaagct
ggcgctaagggtgataagggaaatcctggaccacgaggaagagatggtgagcctggtaca
cctggaaaccctggcccagctgggccacctggaccaccaggacttggagggaactttgct
gctcagatggctggaggttttgacgagaagtctggaggcgctcagatgggtgtgatgcag
ggaccaatgggtccaatgggtccccgtggtccccccggaccttctggagctcctggacca
cagggtttccaaggtggccccggagaggctggagagcctggtccagcaggaccagtggga
cctcgtggaccatctggaccttctggaaaaccgggaagtgatggcgagtctggtaaacct
ggcaaagctggagagcgtggacccgcaggacctcagggagctcgtggattccctggaact
cctggacttcctggaattaaaggacatagaggtcaccctggtctggatggggctaaggga
gaaaatggtgcagccggagccaagggtgagtctggttcctctggagagaatggtgccccc
ggacccatgggcccacgtggtctgcctggtgagagaggacgtcctggagctgctggagct
gcaggtgcccgtggaaatgatggcttgcctggtcctgctggtccacctgggcctgttggt
cccgctggagcacctggtttcccaggatccccaggagccaagggagaggctggtcctact
ggtgtccgtggagctgagggcccgcagggaccacgcggagagggtggtaccccaggatct
cctggaccagctggagcatcgggaaaccctggtaccgatggtattcctggagctaaggga
tctgcaggtgcttcaggtattgctggtgctcctggattccccggccctcgtggcccacca
ggaccacagggagcaacaggacctctggggccaaaggggcagtctggagaccctggtatt
cctggattcaagggtgaagctggacccaagggagagcttggccccgctggtcctcaaggt
ccccctggcccttcaggtgaggaaggaaagagaggagccagaggagagccaggaactgct
ggaccacttggacctccaggagagagaggagctcctggtaatcgtggtttccctggtcag
gatggtcttgctggtgctaagggcgcccctggtgatcgtggtgtttctggagctggtggg
cctaaaggtgcttctggagacccaggacgcccaggagagtccggtcttcccggagccaga
ggtctcaccggtcgccccggagatgctggtcctcaaggcaaagttggaccctctggtgca
cctggtgaggacggtcgccctggcccacctggtcctctgggagcacgtggacaacccgga
gtgatgggattccctggaccaaagggagccaatggtgaaccaggaaagccaggagagaag
ggtcttgttggtcgtcctggactgagaggtctgtctggaaaagatggtgagactggtgcc
gctggaccccatggccctgctggacctgcaggagagagaggagaacaaggtcagcctggt
cctcctggcttccagggtctgcctggaccatctggtgccccaggagaaaatggaaaacct
ggagaccagggtgttcctggagagggtggagctcctggtgctgttggagctagaggtgaa
cgtggattccctggtgagagaggcggcgccggacctcagggacttcagggacctcgtgga
cttcctggaacagctggaactgatggacccaagggagccattggaccagctggcgctctt
ggatctcagggaccacccggtctgcagggtatgcctggagagagaggagctggtggaatc
ccaggaccaaagggagacagaggtgacaatggacagaaaggacttgagggtgctcctgga
aaggatggttctagaggtttgactggtcccattggtcctcctggcccatctggacccaac
ggtgccaagggagagactggacctggtggaccgtctggagctcctggttcccgcggtgct
cctggcgatcgtggtgaggttggtcctcctggacctgctggctttgctggacctcctggt
gcagatggtcagcctggtgcaaagggagagctcggtgaggccggacagaagggagagggt
ggttctcctggacctcagggaccatctggggctcctggacctgtgggacctactggtgtg
tctggacttaaaggagctcgtggtgctcagggagctgctggtgccactggattccctggt
gctgctggcagagttggagctcctggccctaatggtaatcctggccctgttggtccctct
ggtcctgctggtaaagacggaccaaagggtattcgtggtgacgccggccccccaggaaga
tcaggagatcctgggcttcgtggaccttctggtcaacaaggagagaagggagagcctgga
gcgcctggagaacctggtaaagatggaccttttggacctgctggtctgattggatcccgt
ggtcctgtaggtttgcccggtcagcgtggagagagaggattccctggtctccctggacct
tctggagagcctggtaaacagggagcttcaggttctggtggtgatcgtggacctcctgga
ccagtgggaccccctggaattactggacctgctggagatactggtagagagggaactcct
ggttcagatggacctcctggtcgggacggagctgctggtgtcaagggagagcgaggtaac
actggtcctgctggtgcccctggagctcctggtgcccccggtgtccctggacctcttgga
ccccttggaaagcagggagacagaggagaagctggtgctcaaggacctgcaggaccttct
ggacccgctggtgcaagaggaatggctggaccccaaggaccacgtggagacaagggagag
gctggtgaggctggagagagaggacaaaagggtcaccgtgggttcactggtctgcagggt
cttcctggaccccctggtccatctggagattctggaactactggacctgcaggaccaagc
ggtgctaagggaccagctggaccaactggacctgctggcaaagatggatctaatggacaa
cctggaccaattggaccttctggaccccgtggacgctctggagaaactggtcctgctggt
cctcgaggtaacgatggaccccctggtccccctggtccccctggccctggcattgacatg
tctgcctttgctggtctgggtcagacagagaagtcctccgatcctctcaggtacatgagg
gccgatgaggcctccagctccctgaggcagcacgacgttgaggttgactcaacactcaaa
accctcaacagccagattgagaacctgcgcagtcctgacggctcccagaagaaccctgct
cgctcctgcatggacctgaaactatgccaccctgagtggaggagcggtgactactgggtt
gatcccaaccttggcagcacagctgatgccatcaaggtattctgcaacatggagagtgga
gagacctgcgtctacccaagcatcaccaagatccccaagaagaactggtggaccagcaag
agcaaggaccgcaaacacatctggttcggagagaccatgcgtggaggattccaattcagc
tatgcccaggaaggcccagttgccaacaccgccagcatccagctgacattcttgaggctt
ctatccactgaggcaacccagaatttcacttaccactgcaagaacagcattgcctacatg
gaccagaccacaggcaacctgaagaaggctttgcttttgcagggatccaatgatgtggag
atccgtgcagagggcaacagtcgctttacatacagtgtgttggaggatggctgcaagaaa
catacaggccagtggggcaagaccgtctttgagtacaaaacacagaagacctcccgtctg
cccattgtggacattgctcctatggacatcggaggagcggatcaggagttcggagtggat
gtaggcgccgtctgcttcttgtaa
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