KEGG   Solea senegalensis (Senegalese sole): 122777498
Entry
122777498         CDS       T07721                                 
Symbol
prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
  KO
K12855  pre-mRNA-processing factor 6
Organism
ssen  Solea senegalensis (Senegalese sole)
Pathway
ssen03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ssen00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122777498 (prpf6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ssen03041]
    122777498 (prpf6)
Spliceosome [BR:ssen03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    122777498 (prpf6)
 Complex C
   U5 SnRNP specific factors
    122777498 (prpf6)
SSDB
Motif
Pfam: PRP1_N TPR_14 TPR_19 HAT_PRP39_N Suf TPR_16 HAT_PRP39_C HAT_Syf1_CNRKL1_C HAT_Syf1_CNRKL1_N TPR_2 TPR_17 TPR_8 TPR_1 FAT TPR_CcmH_CycH ARM_TT21_C T7SS_EccA1_N TPR_9 ARM_TT21_5th Mt_ATP-synt_B
Other DBs
NCBI-GeneID: 122777498
NCBI-ProteinID: XP_043894723
LinkDB
Position
LG11:26768410..26789900
AA seq 969 aa
MASAGAKQAPKNTSKASAGGTGAAGAAGAPPAMPLASPLMGKKKKPFLGMPAPLGYVPGL
GRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQEEDEEDLNDTNYDEFNG
YAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRELREKEEIEKYRMERPKIQQQFS
DLKRKLAEVSEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFSKHLQTGENHTSVDPL
QGLAGLNTTYPGSMTPGLMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKG
YLTDLNSMIPTYGGDISDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLI
MKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDVRAKKRV
LRKALENVSKSVRLWKTAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENARRV
LNKARENIPTDRHIWITAAKLEEANSNTQMVDKIIDRAITSLHANGVEINREQWIQDAEE
CDKAGSVATCQAVIRAVIGIGIEEEDRKHTWMEDAESCVSHGALECARAIYAHALQVFPS
KKSVWLRAAYFEKSHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAEDVPAARSILA
LAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIE
AAQELCTEALKHYEDFPKLWMMRGQIEEQCENMDKAREAYNQGLKKCPHSVALWLLLSHL
EERVGQLTRARAILEKARLKNPQSPELWLESVRLEFRAGLKNISNTLMAKALQECPNSGI
LWAEAVFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFLRTVKIDP
DLGDAWALFYKFELQHGTEEQQEEVRKRCENAEPRHGELWCAESKHVLNWQKKTGEILAL
VASKIKNTF
NT seq 2910 nt   +upstreamnt  +downstreamnt
atggctagcgctggagctaaacaagcgcctaaaaatacctcgaaagcctccgcgggaggc
accggggcggcgggggccgccggtgcgcccccggcaatgcccctcgcttctccactcatg
gggaaaaagaaaaagccgttcctggggatgcccgctccgctcggttacgtccccggtctc
ggcagaggtgccactggcttcacgacacgatctgatattggtcctgctcgtgatgccaat
gatccagtggatgatcgccatgcgcccccagggaagagaacagttggagaccaaatgaaa
aagaaccaagaggaagacgaggaagatctgaacgacaccaactatgatgagttcaatgga
tatgcaggaagcttgttttccagtggtccctatgagaaagacgatgaagaagcagatgcc
atatatgctgcattagacaaaaggatggacgaaagacgcaaagaaagaagggagttgaga
gaaaaggaagaaatcgagaagtaccgtatggagcggccaaaaatacagcagcagttttca
gatctgaagaggaagttggcagaggtttcagaagaagagtggttgagcatcccagaggtg
ggagatgcaagaaacaagcggcagaggaatccccgctacgaaaaactcacccctgtccca
gacagcttcttttccaaacacctgcagactggagagaaccacacctctgttgaccctttg
caagggctggcggggctgaacaccacttaccccggaagcatgacccctggcctgatgact
ccaggcactggagaactggacatgaggaagatcggtcaagccaggaacacgctgatggat
atgaggctcagtcaggtttctgactctgtgagtggacaaacagtggtagatcctaaaggt
tacctgacagatctcaactccatgatccccacatatggcggggacatcagtgacatcaag
aaagctcgtctgctgttaaagtcagtgagggagaccaatccccatcacccccctgcctgg
attgcatcggcgaggctggaggaggtgactggcaaactgcaggtggcaaggaacctcatc
atgaaaggcactgagatgtgtcctaagagtgaggatgtttggttagaggcagctcggctc
cagcctggtgacacagctaaagccgtggtagcccaggctgtccgccacttgccacagtcg
gtccgcatctacatcagagctgcagagctggagacagacgtcagggctaagaaacgagtc
ctcaggaaagccctggagaatgtgtccaagtctgtgcgtctgtggaagacagccgtggag
ctcgaggagccagaggatgccaggatcatgcttagtcgagcagtggagtgttgccctacg
agtgtggagctgtggctggctcttgcccggttagagacatacgagaatgcccgtcgtgtc
ctgaacaaagctcgagagaacattcccactgaccgacacatctggatcactgccgccaag
ttggaggaggccaacagcaatactcagatggtggacaagatcattgacagagccattact
tctctacatgccaacggtgtggagatcaacagagagcagtggatacaggacgcagaggag
tgtgacaaggctggcagtgtggctacctgtcaggctgtgataagagccgtcattgggatt
gggattgaggaggaggaccgtaaacacacctggatggaggatgcagagagttgtgtgtcc
catggagcgctggagtgtgccagagccatctatgcccatgccctgcaggtgttcccgagc
aagaaaagtgtgtggctcagagctgcctactttgaaaagagccatggcaccagggagtct
ttggaggctctgctccagagagctgtggctcactgtcccaaagcagaggtcctgtggctg
atgggtgccaagtccaaatggctggctgaggatgtgcctgcagccagaagtatcctggct
ctggcctttcaggctaatccaaacagtgaagagatctggctggctgctgtgaaactggag
tccgagaataatgagtatgaaagagctcgtcgactgctggccaaggcccgcagcagtgcc
ccaacagccagggtatttatgaaatctgtcaagttggagtgggtgttgggaaacatagaa
gctgctcaggagctgtgcactgaggcgctgaaacactacgaggacttccctaaactgtgg
atgatgagaggccagattgaggagcagtgtgaaaacatggacaaagccagagaggcttac
aaccaagggttgaaaaagtgtccccactcggtggcgctgtggttgttgctgtctcatctt
gaagagagagtgggacagctgactcgagccagagccattctggagaaggcacgactcaag
aacccgcagagcccagagctgtggctggagtcagtcagactggagttcagggctggactg
aaaaacatttccaacacgctgatggccaaagctctgcaggagtgccccaattcaggtatc
ctgtgggctgaggctgtgtttttggaggccagacctcaaaggaagactaagagtgtggac
gctttgaagaagtgtgaacacgacccccacgtcttgcttgctgtagcaaagctgttttgg
agcgagcgcaagatcactaaagccagagagtggttccttaggacagtgaagatcgaccca
gacctgggagatgcttgggctctcttctacaagtttgagctgcaacacggcacagaggaa
cagcaggaagaagtgcggaagcgctgtgagaatgccgagccccgccacggtgagctgtgg
tgtgccgagtccaagcacgtcctgaactggcagaagaagacgggagagatcttagcgctg
gtcgccagcaagatcaagaacacgttctga

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