Solea senegalensis (Senegalese sole): 122777498
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Entry
122777498 CDS
T07721
Symbol
prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122777498 (prpf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssen03041
]
122777498 (prpf6)
Spliceosome [BR:
ssen03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122777498 (prpf6)
Complex C
U5 SnRNP specific factors
122777498 (prpf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
Suf
TPR_16
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
TPR_2
TPR_17
TPR_8
TPR_1
FAT
TPR_CcmH_CycH
ARM_TT21_C
T7SS_EccA1_N
TPR_9
ARM_TT21_5th
Mt_ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
122777498
NCBI-ProteinID:
XP_043894723
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All DBs
Position
LG11:26768410..26789900
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AA seq
969 aa
AA seq
DB search
MASAGAKQAPKNTSKASAGGTGAAGAAGAPPAMPLASPLMGKKKKPFLGMPAPLGYVPGL
GRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQEEDEEDLNDTNYDEFNG
YAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRELREKEEIEKYRMERPKIQQQFS
DLKRKLAEVSEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFSKHLQTGENHTSVDPL
QGLAGLNTTYPGSMTPGLMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKG
YLTDLNSMIPTYGGDISDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLI
MKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDVRAKKRV
LRKALENVSKSVRLWKTAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENARRV
LNKARENIPTDRHIWITAAKLEEANSNTQMVDKIIDRAITSLHANGVEINREQWIQDAEE
CDKAGSVATCQAVIRAVIGIGIEEEDRKHTWMEDAESCVSHGALECARAIYAHALQVFPS
KKSVWLRAAYFEKSHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAEDVPAARSILA
LAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIE
AAQELCTEALKHYEDFPKLWMMRGQIEEQCENMDKAREAYNQGLKKCPHSVALWLLLSHL
EERVGQLTRARAILEKARLKNPQSPELWLESVRLEFRAGLKNISNTLMAKALQECPNSGI
LWAEAVFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFLRTVKIDP
DLGDAWALFYKFELQHGTEEQQEEVRKRCENAEPRHGELWCAESKHVLNWQKKTGEILAL
VASKIKNTF
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atggctagcgctggagctaaacaagcgcctaaaaatacctcgaaagcctccgcgggaggc
accggggcggcgggggccgccggtgcgcccccggcaatgcccctcgcttctccactcatg
gggaaaaagaaaaagccgttcctggggatgcccgctccgctcggttacgtccccggtctc
ggcagaggtgccactggcttcacgacacgatctgatattggtcctgctcgtgatgccaat
gatccagtggatgatcgccatgcgcccccagggaagagaacagttggagaccaaatgaaa
aagaaccaagaggaagacgaggaagatctgaacgacaccaactatgatgagttcaatgga
tatgcaggaagcttgttttccagtggtccctatgagaaagacgatgaagaagcagatgcc
atatatgctgcattagacaaaaggatggacgaaagacgcaaagaaagaagggagttgaga
gaaaaggaagaaatcgagaagtaccgtatggagcggccaaaaatacagcagcagttttca
gatctgaagaggaagttggcagaggtttcagaagaagagtggttgagcatcccagaggtg
ggagatgcaagaaacaagcggcagaggaatccccgctacgaaaaactcacccctgtccca
gacagcttcttttccaaacacctgcagactggagagaaccacacctctgttgaccctttg
caagggctggcggggctgaacaccacttaccccggaagcatgacccctggcctgatgact
ccaggcactggagaactggacatgaggaagatcggtcaagccaggaacacgctgatggat
atgaggctcagtcaggtttctgactctgtgagtggacaaacagtggtagatcctaaaggt
tacctgacagatctcaactccatgatccccacatatggcggggacatcagtgacatcaag
aaagctcgtctgctgttaaagtcagtgagggagaccaatccccatcacccccctgcctgg
attgcatcggcgaggctggaggaggtgactggcaaactgcaggtggcaaggaacctcatc
atgaaaggcactgagatgtgtcctaagagtgaggatgtttggttagaggcagctcggctc
cagcctggtgacacagctaaagccgtggtagcccaggctgtccgccacttgccacagtcg
gtccgcatctacatcagagctgcagagctggagacagacgtcagggctaagaaacgagtc
ctcaggaaagccctggagaatgtgtccaagtctgtgcgtctgtggaagacagccgtggag
ctcgaggagccagaggatgccaggatcatgcttagtcgagcagtggagtgttgccctacg
agtgtggagctgtggctggctcttgcccggttagagacatacgagaatgcccgtcgtgtc
ctgaacaaagctcgagagaacattcccactgaccgacacatctggatcactgccgccaag
ttggaggaggccaacagcaatactcagatggtggacaagatcattgacagagccattact
tctctacatgccaacggtgtggagatcaacagagagcagtggatacaggacgcagaggag
tgtgacaaggctggcagtgtggctacctgtcaggctgtgataagagccgtcattgggatt
gggattgaggaggaggaccgtaaacacacctggatggaggatgcagagagttgtgtgtcc
catggagcgctggagtgtgccagagccatctatgcccatgccctgcaggtgttcccgagc
aagaaaagtgtgtggctcagagctgcctactttgaaaagagccatggcaccagggagtct
ttggaggctctgctccagagagctgtggctcactgtcccaaagcagaggtcctgtggctg
atgggtgccaagtccaaatggctggctgaggatgtgcctgcagccagaagtatcctggct
ctggcctttcaggctaatccaaacagtgaagagatctggctggctgctgtgaaactggag
tccgagaataatgagtatgaaagagctcgtcgactgctggccaaggcccgcagcagtgcc
ccaacagccagggtatttatgaaatctgtcaagttggagtgggtgttgggaaacatagaa
gctgctcaggagctgtgcactgaggcgctgaaacactacgaggacttccctaaactgtgg
atgatgagaggccagattgaggagcagtgtgaaaacatggacaaagccagagaggcttac
aaccaagggttgaaaaagtgtccccactcggtggcgctgtggttgttgctgtctcatctt
gaagagagagtgggacagctgactcgagccagagccattctggagaaggcacgactcaag
aacccgcagagcccagagctgtggctggagtcagtcagactggagttcagggctggactg
aaaaacatttccaacacgctgatggccaaagctctgcaggagtgccccaattcaggtatc
ctgtgggctgaggctgtgtttttggaggccagacctcaaaggaagactaagagtgtggac
gctttgaagaagtgtgaacacgacccccacgtcttgcttgctgtagcaaagctgttttgg
agcgagcgcaagatcactaaagccagagagtggttccttaggacagtgaagatcgaccca
gacctgggagatgcttgggctctcttctacaagtttgagctgcaacacggcacagaggaa
cagcaggaagaagtgcggaagcgctgtgagaatgccgagccccgccacggtgagctgtgg
tgtgccgagtccaagcacgtcctgaactggcagaagaagacgggagagatcttagcgctg
gtcgccagcaagatcaagaacacgttctga
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