KEGG   Solea senegalensis (Senegalese sole): 122778198
Entry
122778198         CDS       T07721                                 
Symbol
exosc3
Name
(RefSeq) exosome complex component RRP40
  KO
K03681  exosome complex component RRP40
Organism
ssen  Solea senegalensis (Senegalese sole)
Pathway
ssen03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ssen00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    122778198 (exosc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssen03019]
    122778198 (exosc3)
Messenger RNA biogenesis [BR:ssen03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     122778198 (exosc3)
SSDB
Motif
Pfam: RRP40_S1 KH_6 RRP40_N_mamm Rrp40_N RRP4_S1
Other DBs
NCBI-GeneID: 122778198
NCBI-ProteinID: XP_043895771
LinkDB
Position
LG12:1742097..1751716
AA seq 244 aa
MDSALRERVGQVLLPGDEFCCDTDGVISLSDTVRPEKVLCGPGLRRSGDRLLVCKSGVLR
HKEPNVFWIDSQQWRYVPVKGETVIGVVAAKSGDVFKVDFGGSEQASLTYLSFEGATKRN
RPNVQVGDLVFAQFIVANKDMEPELTCMDSSGRANGMGVFGGGGLLFRVSLGLVRRLLSP
GSELRSDLEKLLPCELVVGMNGRVWTRAADVQKTLVLANLLQSCDTMSCSQRRQLFSRVR
QGAL
NT seq 735 nt   +upstreamnt  +downstreamnt
atggactccgcgctcagagaacgagtgggtcaggttctgttgccgggggacgagttctgc
tgcgacaccgacggcgtcatctctctgtcggacaccgtgaggccggagaaggttctgtgc
ggaccgggtctgaggcgcagcggagaccggctgctggtctgtaagagcggcgtcctgcgc
cacaaagagcccaacgtgttctggatcgactcccagcagtggcggtatgtcccggtcaaa
ggggagacagtgatcggcgtggtcgctgcaaagtccggagacgtcttcaaagtggacttt
ggaggcagtgagcaggcgtcgctgacgtatttgtcgtttgaaggagcgacgaagaggaac
agacccaacgttcaggtcggggacctggtcttcgctcagttcatcgtagcgaacaaggac
atggagccggagctgacgtgcatggacagttctggacgagccaatgggatgggcgtgttc
ggaggaggcgggcttctcttcagagtctctctgggactcgtgcgaaggctgctgtcgccc
ggcagcgagctgcgctctgacctggagaagctcctcccctgtgagctggtggtcgggatg
aacggacgcgtgtggacgcgagcggccgacgtccagaagacgctcgtcctcgccaactta
ctgcagagctgtgacaccatgagctgctcgcagagacgccagctgttctccagggtccga
cagggggcgctgtag

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