Solea senegalensis (Senegalese sole): 122778336
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Entry
122778336 CDS
T07721
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
122778336 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ssen01009
]
122778336 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssen04515
]
122778336 (pcdh20)
Protein phosphatases and associated proteins [BR:
ssen01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122778336 (pcdh20)
Cell adhesion molecules [BR:
ssen04515
]
Cadherins
Protocadherins
122778336 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
DUF4193
Motif
Other DBs
NCBI-GeneID:
122778336
NCBI-ProteinID:
XP_043896036
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All DBs
Position
LG12:complement(12273927..12277284)
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AA seq
859 aa
AA seq
DB search
MGHGTPHNMNWTGLLQNLLLLVHLRQIICGSVQFSVPEEQEPGTLAGSLSEHFLPPYQLL
TQDYLWLDRSTGNLYTTELKIDREILCPEETKAEECIILHYAIVSSSGELIQFPVIIEDV
NDNAPHFENNEIHLRISEDVVVGTSFLIDDQALDSDAGPNGEVHYHLEDSGGVFSLKVED
EGLVIMLVVQAALDRETQDQYRMALVATDCGTEHLSATATLKVTVTDVNDNCPNFSSDSP
RNVTIPGDAQKNMFVAQVRATDSDLGLNAAITYSLSPKVSERAKKLFSLDSLTGYIRLTQ
DLRSDNSEELVLKVLASSHHCPPADIQVTVSVLPKANKELTIKIKFIVDHHNQTLVLPEN
QPPTGLAVLELEGDSSFKGSSLAIEGEVPFTLNPQNGKYLLSTSKPLDYEMKREHHITVI
VHGRSGEVSTIIPSRHTIRVLVADVNDNSPRFLQSHYLLDVMENNQPGMSLLQVSASDAD
SAHNGRVTYRLDKHTSTIFYIDRVSGQLSVSDSLDREEQSEHKLIVFARDGGSPPLESAT
TVSICVLDQNDNAPVFKTPHFIFFISENVPPFTLVGRVGVTDSDEGENGNTVLHVVNSSG
PFVVDNPQGTLHTTTNLDRETQDSYELYLLASDHGHPVNFTSTARVTIFVEDINDNQPKV
IFPSSNSSCLTVSPTATAGSMVTKIYAIDEDSGLNSEITYTIVAPESVKNSSPFQVDSRS
GNITLTQRLLQTHLGMHHLFIVVRDGGKPIPLFSTVWVNLLVNESTEPCHLERAPTWTGT
TNLVQTPSRAPICEIEAPRSAQLTLLAGMGLMLASTCLFLVTSVLYIKQRRLSVRQKTRG
QIDENEIPLRGRDKYNSND
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgggtcatggaactcctcataatatgaactggaccggacttctgcagaatctactgctt
ttggtccacctcaggcagatcatatgtggttcggtccagttttctgtcccagaggaacag
gaacctggcactctagccgggtcactcagtgaacactttctacctccgtaccagctcctg
acacaggactacctgtggttggacagaagcacagggaatctttacaccactgagctaaaa
attgatcgtgagatcctctgccctgaggagacaaaagctgaagaatgcattattctgcac
tacgctattgtgagctcctctggggagcttatacagtttcctgtgatcatagaggacgtc
aatgacaatgcacctcattttgaaaacaatgaaatacacctgaggatttctgaggacgtg
gttgtagggaccagttttttaatagatgaccaggctctggacagtgatgctggtcctaat
ggagaggtgcactaccacctagaagattccggtggagttttcagtttaaaggttgaagat
gaaggacttgtcatcatgctagttgtgcaagccgctctggatagagagactcaggaccag
tatcgcatggcgctggtggccacagactgtggcacagagcacttaagcgcaacggcaact
ttaaaagtcacggtgacagatgttaatgacaactgtccaaactttagctctgacagccct
cgcaatgtcaccattcccggagatgcccaaaagaatatgtttgttgctcaggtcagagcc
acagactcagatttaggcttgaatgctgccatcacttattccctcagtcccaaagtctct
gagcgggccaagaagctctttagccttgacagcctcactgggtacatcaggctaacacag
gacctccgaagtgacaactctgaggagctggtgttaaaagtgttagctagcagccatcac
tgccctccagcagacattcaggtaaccgtatctgtgctccccaaggcaaacaaagagctg
accatcaagatcaagttcatagtggaccatcacaaccagactttggtgttaccagagaac
cagccccccaccggcttagctgttttagagctcgagggtgacagcagctttaaaggttca
tctcttgccattgagggtgaagtgcctttcactttgaacccacagaatggcaaatatctg
ctttccacatcaaagccactggattatgagatgaaaagggaacatcatattactgtgata
gtccatgggagatcaggtgaagtgtctacaatcattccttccaggcatacgatcagggtt
ttggtggcagatgtcaatgataattctccacgtttcctccagtctcattacctgctggac
gtgatggaaaacaaccagccgggaatgtcactgttgcaagtttcggcttcagacgcagac
agcgcacacaacggcagggtgacctacaggctggacaaacacacatctaccattttttac
attgaccgtgtgtcaggtcaactgtctgtgtcagactctctggacagggaagagcagagt
gaacacaaactcattgtgtttgcaagagatggcggctcgcctcccttggagtctgcgacc
acagtatctatttgtgttcttgaccagaatgacaatgcacctgtttttaaaacccctcac
tttatctttttcatctctgagaatgtaccacctttcaccctggtggggagggttggggtg
acagactcagatgaaggggagaatgggaacacagtgttgcatgttgttaacagcagtgga
ccatttgttgtggataacccccaggggacacttcacaccaccacgaacttggaccgtgag
acgcaagacagctatgaactctacctgctggccagcgatcacgggcacccagtcaatttt
acatccactgccagggtaactatctttgtggaggacatcaatgacaaccagcccaaagta
atcttccccagcagcaactcctcgtgcctgactgtctctcctactgctacagcaggctcc
atggtaacaaagatctacgctattgatgaggactcagggctgaattcagagattacatac
actattgtggcaccagagtcagtgaaaaacagcagcccctttcaggtggattcaaggtct
gggaacatcaccttgactcagcggcttctacagacacacctgggaatgcatcacctgttc
atcgtggtcagagatggggggaaaccgattcctctttttagcactgtctgggttaatctg
ttggtcaacgagagcacggagccctgccacttagagagggcaccaacctggacagggaca
accaacttggttcaaaccccgtcaagggccccgatatgtgaaatagaggctccaaggtct
gctcagctgacattgttagccggcatgggtttaatgctggcatccacatgtttgtttctc
gtgacatcagttttatacataaagcagaggcgactaagtgtacgtcagaagacaagggga
cagattgacgagaatgagatcccactcaggggcagagacaaatataactctaatgactaa
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