Solea senegalensis (Senegalese sole): 122778418
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Entry
122778418 CDS
T07721
Symbol
col23a1a
Name
(RefSeq) collagen alpha-1(XXIII) chain isoform X1
KO
K24355
collagen type XXIII alpha
Organism
ssen
Solea senegalensis (Senegalese sole)
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssen00536
]
122778418 (col23a1a)
Glycosaminoglycan binding proteins [BR:
ssen00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122778418 (col23a1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
122778418
NCBI-ProteinID:
XP_043896238
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All DBs
Position
LG12:complement(12432021..12548444)
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AA seq
626 aa
AA seq
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MDTASDSLGESKPVCQCATKSAVHRWLPGFPIALCLLMSLSSITVCLLMSFKTFQLENRL
QMEMVYPPHRAFLNEDGSLIPELSTPIRKLVEEKVVVLMPKMRTARDVGPECSCPPGPPG
KRGRMGRRGEPGPPGKVGRDGYPGPLGLDGKPGLPGPKGSQGPAGPKGEKGDQGDIGPRM
VYPRYDHGFLSGEQSNSFQRRFLKGDQGQAGPAGPPGPPGPPGPRGPPGNTGKDGPRGPS
GEPGFPGRDGIEGAQGLPGKPGEDGEPGYPGPQGPPGTKGEPGTAEKGARGMDGLPGLKG
DKGEVGEQGPQGHMGYPGEKGTAGSSDIIDFNGKLLDAFQAINTISVSGPPGPPGVPGPP
GEKGELGLPGPAGVDGDKGPKGDLGETGSPGERGEKGEMGLSGPSGIDGQKGEKGDCRLD
DNLVQMISQPGPPGPPGPPGVPGSPGSMGLHGMPGPKGEPGFGIKGEKGEAGTHGLRGLD
GQQGLTGSPGLVGLPGAKGEKGRPGEPGLDGFPGLMGEKGDRGERGEKGDRGAVGKRGLK
GQKGEQGPPGLDQPCPVGCDKTKGLSVEAELSSLPAPPPPPPLPPSGPEAPCPVGQDGLP
IPGCWHKGHFEDMAKQKLKRKRLSQP
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggatacagccagcgactcactcggggaaagtaagccggtgtgtcagtgtgccaccaag
tctgcggtgcaccggtggttgccaggtttccctatcgctctgtgcttgctgatgtccctc
agctccatcaccgtgtgtctcctgatgagcttcaagaccttccagctggagaatcgactg
cagatggagatggtctacccgccgcacagggcttttcttaacgaggatgggtccttaatc
ccagagctgagcacacccatacggaaactcgtggaagagaaagtggtggtactgatgcca
aaaatgcggacggcaagggatgttggcccagaatgctcctgtcctccagggcctccagga
aagcgtggaagaatgggaagacgaggggaacctggaccgcccggcaaggttggacgggat
ggatacccgggtcctctgggcttggatggaaaaccaggtttaccgggtcctaaaggaagc
cagggacccgccggacccaagggagaaaagggtgaccaaggagacattgggccacggatg
gtctatccccggtatgaccatggctttctctctggagagcagtccaacagctttcagaga
cgctttctgaagggtgaccagggccaagctggacctgcaggtcctcccggtcctccgggc
cctcctggcccccgaggcccccctgggaacacaggcaaggacggaccccgtggcccttct
ggggagccgggttttccaggacgtgatggtattgagggagcacaaggattgcctgggaag
ccgggagaagatggtgagccaggttacccagggccacagggtccccccggtacaaagggt
gagccaggtacagcagaaaagggagccagaggtatggatggactcccaggattaaagggt
gacaaaggggaggtaggagagcaaggaccacagggacacatgggttatcctggtgaaaaa
ggcacagcgggttcctcagacatcattgacttcaatgggaaactgctagatgctttccag
gccatcaacaccatcagcgtttcgggcccacctggaccacctggagtcccaggccctcca
ggggaaaagggtgagctcggtttacctggtccagcaggagttgatggggataagggtcct
aaaggtgatcttggtgagacaggatcacctggtgagagaggggagaagggagagatgggg
ctttctgggccttctggtattgatggacagaaaggagaaaaaggcgactgcagactggat
gacaacctggttcagatgatttcacaaccaggaccacctggtccaccaggaccaccagga
gttcctgggtcacctggatccatggggcttcatgggatgcctggtcctaagggtgagcct
ggatttgggataaagggagagaagggggaagctggtacacatggactcaggggactagat
ggccagcagggtctaactggatctccaggtttagtgggacttccaggagccaagggagaa
aaaggcagaccaggggagcctggactagatggtttcccaggtctgatgggagagaaaggc
gaccgaggagagagaggagagaagggtgacaggggagcagtgggaaagagaggtcttaag
ggccagaagggagagcagggtcctccaggtttggaccagccttgccctgtgggttgtgac
aaaactaaaggtctgtctgtggaggcagagctttcttcccttccggctcctcctcctcct
cctcctcttcctccttctggccctgaggccccctgtccagtgggacaagatggtctgcca
ataccaggttgctggcataagggacattttgaggacatggcgaagcagaagctcaaacgc
aagcgtctctctcaaccctga
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