Solea senegalensis (Senegalese sole): 122778421
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Entry
122778421 CDS
T07721
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked
KO
K16498
protocadherin delta 1
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
122778421 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ssen01009
]
122778421 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssen04515
]
122778421 (pcdh11)
Protein phosphatases and associated proteins [BR:
ssen01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122778421 (pcdh11)
Cell adhesion molecules [BR:
ssen04515
]
Cadherins
Protocadherins
122778421 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
TMEM154
DUF6249
Motif
Other DBs
NCBI-GeneID:
122778421
NCBI-ProteinID:
XP_043896247
LinkDB
All DBs
Position
LG12:10368465..10390919
Genome browser
AA seq
1043 aa
AA seq
DB search
MDLASQAHALVVLLTCVVLLCRAQERDYTVKEEQPENVRIGNLRKDLDLNLDPTIRLSSP
LQFKPVYKTGDVPLVRVEANTGEIFTTNHRIDREKLCSGVFAEKRCYYEIEVAVLPDEIF
RLVKIRFLIEDVNDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYELVK
SVSEFGLDIIETPEGDKWPQLIVQQNLDREQKDTFVMKIKVEDGGNPPKSSTAILQVTIS
DVNDNRPIFKDSELEVTVPENAPTGTSVAQLHATDADLGSNAQIHFAFSNQISAAIKRHF
AIDSSTGLITVKQPLDREVTPVHKLIVLASDGSSTPSRATVTVNVTDVNDNVPSIDTRYI
INLVNGTVLLSENAPLNTKIALITVTDKDADLYGKVACYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIKIVASDRGTPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPENND
PSTQLIKISATDADSGHNAEIIYSLGPDAPDGFNIDRRSGILSVGKRLDREKQERYSFTV
IARDNGSTSLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDADAG
DNAVITLSILNGKDNFIIDPQTGVIKPNITFDREQQSSYTFMVKAIDGGHPPSSSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVRTPTVPGAVVTRVFAIDNDTGMNAELQYSILSSII
ITSRVSPRGLFAIDKSTGNITLQEKIVAADHGLHRLVVKVKDLGQPESLHAIALIHLFVN
DTVSNATFIQEQLRKSMETPLDRNIGDSEVTPQANGYVIVVIAIIAGTMTVILVVFVTAL
VRCRQTPRHKVVQKGKQSGEWVSPNQENRQIKKKKRRKKRSPKNLLLNFVTIDESKPDNP
THDHVNGTLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPV
APKKHHVIQELPLDNTFVVGCDSLSKCSSTSSDPYSVSECSCQGGFKTAGQITTRQEMAL
KTPHYGTLCGTGTTRSHRIKINL
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggatttagcaagtcaggctcatgcgctggtggtcttactcacctgtgtggtcttgcta
tgccgggcccaggagagggactacacagttaaggaggagcagccagagaacgtccgcatc
ggcaacctgcggaaggacctggacctcaatctagaccccaccattaggctgtcctcacca
ctgcagttcaagcctgtgtacaagacaggtgacgtgcctttggtgagagtagaggccaac
acgggcgagatctttaccaccaatcacagaatcgaccgggagaagctgtgctccggggtc
tttgccgagaaacgctgctattatgaaatcgaggtggccgtgctgcctgacgagatattc
cgactggtcaagatccgcttcctgattgaggatgtgaatgacaacgcaccccttttccag
tccactgtaataaacatctcgattccggagaacacggcaatcaacactcgatacccggtg
ccctcggcgtttgaccctgacgtggggatcaatgggattcaacattatgaactggtgaag
agtgtcagtgagtttggcttagacatcattgagactcctgaaggagacaagtggccacag
cttattgttcagcagaacctggatcgtgagcagaaggacacttttgtgatgaagatcaag
gtggaagatggcggcaaccctcccaagtccagcaccgccattctccaagtcaccatttct
gatgtcaacgacaatcgccccatctttaaggacagcgagctggaggtcacagtgccagag
aatgcacccacggggacgtcggtcgctcagcttcatgccaccgacgcagacctgggttcc
aacgcacagattcacttcgctttcagcaaccagatctctgctgccatcaagcgccacttt
gccattgacagttccacaggactgataactgtgaagcagccactggacagggaggtgact
cctgttcataaactcatcgtcctggccagcgatggcagctccaccccttccagagccaca
gtgactgttaatgtaacagatgttaatgacaatgttccctctatagacactcgctacatt
atcaacctggttaatgggactgttctgctgtctgagaatgcacctcttaacaccaaaata
gccctaattactgttactgacaaggatgcagatctctatggcaaagtagcttgctacacc
gaccacgatgttccatttcggttgaagcctgtctttaatgatcagttcttattagagaca
gctgccccactagattatgagacgactcgagaatatgcaattaagatagtggcctcggat
agggggacgcctcctttgaacacttcagctatggttttaattaaaatcaaggatgagaat
gacaatgcacccattttcccccagccagaaatccaactttccataccggagaacaatgac
ccttctacacagttaataaaaataagtgccacagatgcagacagtggacataatgccgag
attatttatagtctcggccctgacgcacctgatgggtttaacatagacagacggtcagga
atactttctgttggcaagcgactggacagagagaagcaggagaggtactcattcactgtc
atagctagggacaacggctccacgtccctacagagcaatgtcacagtcaggctaatcgtc
caggaccttaatgacaacagcccagctttcacacaccccgagtacaacttctatgtgcct
gagaacctgcctctctatggaactgtgggcttaatcacagttacggatgcagatgcagga
gataatgctgttataaccttgtccattttgaacgggaaagataatttcatcattgaccct
caaactggtgtgatcaaacccaatattaccttcgatagggagcagcaaagctcctacaca
tttatggtcaaggcaattgacggaggacatcctccaagctcctcgtatgccaaggtcacg
atcaacgtggtcgatgtaaatgacaaccgtcctgtgtttgtcatcccgtcctccaattac
tcatatgacctagtgcggacccccactgtccctggtgctgtggtcaccagagtgtttgcc
attgacaatgacactggtatgaatgctgagctgcagtacagtattcttagcagcatcatc
atcacatcgagggtctccccgcgaggtctctttgccatcgacaaatcaaccggtaacata
acactgcaggagaaaatagtagcagctgatcacgggcttcataggcttgtagtcaaggtg
aaggatctaggccagcctgagtcattacacgcaatagcacttattcacttgtttgtcaat
gacactgtgtcaaatgctacctttattcaagagcagctgcgaaaaagtatggagacaccc
ttggaccgtaacataggggacagcgaggtaacgcctcaagccaacggatatgtgattgtt
gtcatagctatcatagcagggaccatgactgtcatcttagtggtatttgtgactgccttg
gtgcgctgccggcagacacccagacacaaggtggtgcagaagggcaagcagagtggtgag
tgggtgtcgcccaaccaagagaaccgtcagatcaagaagaagaagaggagaaagaagcga
tcccccaagaacctcctcctgaactttgtgaccatcgatgagtccaagcctgataaccct
acccacgaccatgttaacggtacactggatctccctgtggaacttgaggagcaaaccatg
gggaagtacaactgggccaccacgcccaccaccttcaaacctgacagcccagacttagcc
aagcattacaagtcagcgtcccctcaacccacatttcaaatcaaaccggagacgccagtg
gccccaaagaaacaccacgtgatccaggagctccccttggacaacacatttgtggtgggg
tgtgactcactctccaagtgctcatcgactagctccgacccatacagtgtctcagagtgc
agctgtcaggggggattcaagactgcggggcaaatcaccacccgacaggagatggcactg
aaaacaccacactatggcacactctgtggcacaggtacaactcgctcccacaggattaaa
atcaatctctag
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