Solea senegalensis (Senegalese sole): 122778433 Help Entry 122778433         CDS       T07721                                  Symbol prpf19 Name (RefSeq) pre-mRNA-processing factor 19   KO K10599   pre-mRNA-processing factor 19 [EC:2.3.2.27] Organism ssen  Solea senegalensis (Senegalese sole) Pathway ssen03040   Spliceosome ssen04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:ssen00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     122778433 (prpf19)   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     122778433 (prpf19)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:ssen03041]     122778433 (prpf19)    04121 Ubiquitin system [BR:ssen04121]     122778433 (prpf19)    03400 DNA repair and recombination proteins [BR:ssen03400]     122778433 (prpf19) Enzymes [BR:ssen01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      122778433 (prpf19) Spliceosome [BR:ssen03041]  Complex B   Other components    Prp19 complex     122778433 (prpf19)  Complex C    Prp19-CDC5 complex     122778433 (prpf19) Ubiquitin system [BR:ssen04121]  Ubiquitin ligases (E3)   U-box type E3    122778433 (prpf19) DNA repair and recombination proteins [BR:ssen03400]  Eukaryotic type   Other factors with a suspected DNA repair function    PSO4 complex     122778433 (prpf19) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40_Prp19 Beta-prop_EML_2 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Prp19 WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR75_1st Beta-prop_EML ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_SCAP NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_TEP1_C Beta-prop_IFT122_1st WDR90_beta-prop_4th PEP5_VPS11_N Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_SPT8 Beta-prop_HPS5 U-box Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_Nup120_160 PROPPIN Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_DCAF12 B-prop_COPA_B_2nd Ge1_WD40 Cytochrom_D1 zf-Nse ATG16 Motif Other DBs NCBI-GeneID:  122778433 NCBI-ProteinID:  XP_043896268 LinkDB All DBs Position LG12:complement(11580227..11585727) Genome browser AA seq 505 aa AA seqDB search MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGTDPMNGQPLSEEQLVDIKVSHP IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL TKEVTAAREALATLKPQAGLVAPQAVPASQPAVAGAGGEPMDVSEQVGMTPEIIQKLQDK ATILTTERKKRGKTVPEELVRAEDLSKYRQVASHAGLHSASVPGILALDLCPSDTNKVLT GGADKNVVVFDKNEEQIVATLKGHTKKVTSVIYHPSQSVVFSASPDTTIRVWSVTGGNCV QVIRAHEAGVTGLSLHATGDYLLSSSEDQYWAFSDVQTGRVLTKVTDESAGCALTCAQFH PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSLKLW DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFTDHTGLVT GVAFGENAQFLTSTGMDRSLKFYSL NT seq 1518 nt NT seq  +upstreamnt  +downstreamnt atgtctttggtttgtgcaatctccaacgaggtgccggagcacccgtgcgtctctccagtg tccaaccaggtgtttgaacgcaggctgatcgagaagtatatcgcggagaatgggacggat ccgatgaacggacagccgctgtctgaagaacagctcgtagatattaaagtgtcccatccc attagaccaaaggcaccatcagcaacaagcatccctgccattctcaaatcccttcaagat gaatgggatgccgttatgcttcacagcttcaccttgcggcaacagctgcagactacccgt caggaactgtcacatgctctttaccaacacgatgcagcctgcagagtcattgctcgactc accaaagaggtcactgctgcgagagaagctcttgctacactcaaaccccaagctggattg gttgcccctcaggcagttcctgcctctcagcctgctgtagcaggggctggtggagagcct atggatgtaagtgaacaggtgggaatgaccccagagatcattcagaagcttcaagacaaa gctaccatcctcaccacagagagaaagaagagaggaaagactgtgccagaggagctggtt agagctgaggacctcagcaagtaccgccaagtcgcctcccatgctggtctccatagtgcc agtgttcctggcattctggctctggatctgtgtccctcagacactaacaaagtactcact ggtggagctgataagaacgtggtggtgtttgacaagaacgaggagcaaattgtggcaaca cttaagggtcacacaaagaaggtcacctctgtcatttaccatccctctcagtctgtggtc ttctctgcatctccagacaccaccatccgtgtctggtctgtcactggaggcaactgtgtc caggtgattcgtgcccatgaagcaggtgtcactggactctccctacatgctactggagac tacctgctcagctcctctgaggatcagtactgggccttctctgatgttcagactggtaga gtccttaccaaagtcactgatgaaagtgctggctgtgctctcacctgtgctcagttccac cctgatggtctcatttttggcactggtacggctgactcgcaaatcaagatttgggatctg aaggagcgcactaatgtggccaacttccctggccactctggtcctgtcacctccattgct ttctctgagaatggatactacctggccacaggggcccaggatagctctctgaaactgtgg gatctgaggaagctgaagaacttcaagaccatcactctcgacaacaactatgaggtaaag tcccttgtgttcgatcagagtggtacgtacctggcagttggggggtctgacatccgtgtc tacatctgcaagcagtggtctgaggtcctcaacttcacagaccacactggattggtaact ggagtggcctttggagagaatgctcagttcctgacctctacaggaatggacagaagtctc aaattctacagtttgtag

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