Solea senegalensis (Senegalese sole): 122778855
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Entry
122778855 CDS
T07721
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122778855 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssen03021
]
122778855 (polr1a)
Enzymes [BR:
ssen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122778855 (polr1a)
Transcription machinery [BR:
ssen03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
122778855 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
CDC45
DUF4604
Pox_C7_F8A
Motif
Other DBs
NCBI-GeneID:
122778855
NCBI-ProteinID:
XP_043896894
LinkDB
All DBs
Position
LG12:20916166..20941143
Genome browser
AA seq
1697 aa
AA seq
DB search
MLFEKDVPWRRLEGMSFGMYSAEEIRKLSVKTITNFRFLDGVGNVAPNSLYDLALGPADN
KEVCSTCCQGFNACPGHLGHVELPLPVYNPLFFDKLYLLIRGSCLSCHTLTCPRAAIHLL
LNQLKLLDHGAMQEVYQIEQVLNQYLEVTPKASGDEIEQVLKEFTDSVLGVNAESSNVTN
PIKHLVEKKSSLINDFWRIQMTSRKCPLCRSGRITVRREHNSKLIVTMPSGAQTTEDTED
LLAGKRVYLTASTAREHINKLWETEGFFLKCLFSGVEEATPSEAATASKEVEKGFCPDLF
FLELLVVPPCRYRPINRIGDQMFTNGQTVNMQAVMKDCGIIRKLLALIAGEKNPQEEVAP
EQNDQSFLLVIPGQTLTDKLYNIWIRLQTHVNIVFDSDMDKMMTEKYPGIRQILEKKEGL
FRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNG
PNVHPGASLVINEDGKKTILSASNLAQREAVAKQLLTPCPGPHKIPVKIVNRHIKNGDVL
LLNRQPTLHRPSIQAHSARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQNELGRAEA
YTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRDQYTELVYRGLTDKPGRV
KLLPPAILRPQQLWTGKQVVSTLLLNVIPAKAVPLNLVGKSKIPSKAWIQVPPRSAPGYK
PDTMCDSQVVIRHGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAY
LQLYRGFTLGVEDILVKPGANKQRKKIIKGSLNIGAKALQAAFNLPSNVDQTEAQSRWQD
AHLDPDQRDFIMADHKFKEVANQVNNDINKVCMPIGLHTSFPDNNLQLMVQSGAKGSTVN
TMQISCLLGQIELEGRRPPLMPSGKFLPCFQPYDPAPGAGGFVSGRFLTGIKPQEFFFHC
MAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLEIPK
TPFLQQQQFPFIEDNYEVIQRSQDLDNVLSRLDPLAASQHFAAIQRWKAKREMACPRRGA
FLLYSQKKLAKLKEAEQAAGPDVCGRAAAVLQLAQQWYSLDDYSRSKYSRKTLRCPEPSL
GLLRPDVCFGSVSENFHRITEKYLQSRSTTSQDKVDIHSLRRLLHYKWQRSLCDPGEAVG
LLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVAGSNIKTPMMSVPVLNNK
KALKRAKTLRKKLTRVCLAEVLQKVDVLESLRVEGHQRQRSFKVTFHFLPPDRYCDDKLL
SPHQILHYMEIRFFRLLLEAIKKRSAKLASIAVETRKATPGDNDNDGMANTAGLDDGEEE
EEREIVDDQGDEGDADASDAKRKGKQEEEVDYESEEEDDGEEEDVEDKNKPMEDECEEET
RDRSMLPESEEKKKKKKKRKETKKGGGEEAMSQMRVNTVLQTHTAIERYCYDHEHELWCE
VDLVLPVSKVHFDLTSVLTTVAQNAVIMETKGLTRCLLSEATTKTGEKETVLNTEGINMH
EMFKYSDILDINRLYSNEVHAMANTYGIEVGLKVIEKEIKDVFAVYGIEVDPRHLSLVAD
YMCFEGVYKPLNRHAIRSNSSPLQQMTFETSYKFLKQATMLGSHDQLVSPSACLVVGKVV
RGGTGLFELKQPLQSEN
NT seq
5094 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttgaaaaagatgtgccatggcggcgcctggagggcatgtcgttcggcatgtac
tccgccgaagagataagaaagctgagtgtgaaaacgatcaccaacttcaggttcctcgat
ggagttgggaatgtggccccaaacagtctgtacgatctggctctaggaccagcagacaac
aaagaggtgtgttcaacctgctgtcagggtttcaacgcatgtccaggtcatctggggcat
gtggagctacctttacctgtgtacaacccactgttctttgataaactctacctgttgatt
cggggttcctgtctgtcgtgtcacacattaacatgccccagagctgccatccacctgctg
ctgaaccagctgaagttgttggatcatggagccatgcaggaggtctatcagatagaacaa
gttctcaaccagtacctggaggtgactcccaaagcctctggagatgagattgagcaggtt
ctaaaggagtttacagactcagtacttggagtgaatgctgaaagttcaaacgtcacaaat
ccaattaaacaccttgttgaaaagaagagcagtctgataaatgacttttggaggatccaa
atgacatctaggaaatgtccattatgcaggagtggcagaattacagtgcgtcgtgagcac
aacagtaagctgatagtcacaatgccatcaggcgcacagaccactgaggacacagaggat
cttctggctggaaagagagtgtatctgactgctagtactgctcgagaacacatcaataaa
ctgtgggaaacagaaggtttcttcttgaagtgtctgttctcaggggtggaagaggccact
ccatcagaggcggcaacggcatcaaaggaggtagagaagggtttctgccctgaccttttc
ttcctggagttgcttgtggtcccaccatgcagatatcgtccaatcaatcgaattggtgac
cagatgtttaccaacggtcagaccgtcaacatgcaggcggtcatgaaggactgtgggatc
atcaggaaacttctggctcttatagctggggagaaaaatcctcaagaagaagtggctcct
gaacagaatgatcagtcatttctgttggtgatccccgggcagacactgacagataaactc
tacaacatctggatccgactacagacccatgtcaacattgttttcgacagtgacatggac
aaaatgatgactgagaaataccctggaatcagacagatcttggaaaagaaggagggattg
tttaggaaacacatgatgggcaaacgagtggactacgctgcacgatctgtcatctgtccg
gacatgtacataggaaccaacgagatcggaatacccatggtgtttgccaccaagctaacg
taccctcagcccgtcactccatggaacgtgaaggagcttcgtcaggctgtcctcaatggg
cccaacgtccaccccggtgcttccttggtgatcaatgaggatggcaagaaaaccatctta
tcagcctctaatcttgctcagagagaagcagttgccaagcaactgttgacgccctgtcct
ggtccacacaagataccagtgaagatagtgaatcgtcatataaagaatggagatgttttg
ttactaaacagacaaccaactctgcacagaccttccatacaagcccacagtgcccgcatc
ctgccaggagagaaggttttaaggcttcactatgccaactgcaaggcttacaatgctgac
tttgatggagacgagatgaacgctcacttccctcagaatgagctgggcagagcagaagct
tacactctagtcagcactgatcaacagtacctcgtccccaaggatggtaaacctttagca
ggtctgatccaggaccatatggtgtcaggaacaagaatgacaatacgaggctgtttcttc
actcgggaccaatacactgagttggtataccgaggactgactgacaagccaggcagagtg
aaactgctgcccccggccatactcagacctcagcagctgtggacgggcaagcaggtggtg
tcgactctcctgctgaatgtcatcccagcgaaagctgttcctctcaacctggtcggtaaa
tcaaaaatccccagcaaggcgtggatccaagtcccacctcgctccgctccaggatacaaa
cctgacaccatgtgtgactcacaggtggtgattcgtcatggggagctgctggttggggtt
ctggacaaagctcactatggctcctcagcctatggtctggtccactgctgctatgagctg
tacggaggagagaccagcggcaagctgctcagctgcctggctcgactcttcactgcatac
ctgcagctgtacagaggttttactttgggtgtggaggacattctggtcaaaccaggagct
aataagcagaggaaaaagatcattaaagggtcacttaatattggcgccaaagccctccag
gcagctttcaacctgccctccaatgtggatcaaactgaggctcagagtcgctggcaggac
gctcacctcgacccagaccagagagatttcatcatggccgaccacaaattcaaagaagtg
gccaaccaagtgaacaacgacatcaacaaggtgtgtatgccaattggactccacacgtct
ttcccagacaacaaccttcagctgatggtccaatcaggagccaaaggatctactgttaac
accatgcagatatcgtgtctgcttggtcagattgagttggaaggccgcaggcctccattg
atgccatctggcaaattcttgccatgtttccaaccgtatgaccctgctccgggtgctgga
ggctttgtctctggaagattcctcacaggcatcaaaccacaggagtttttcttccactgc
atggctggcagagaaggactggtcgacacagccgtgaaaacctccagatctggatacctg
cagagatgtgttataaagcatctggagggtttggtagtgcaatacgatctgacggtgagg
gacagtgatgggtctgtggtccagttcctctacggtgaagatgggctagaaatccccaag
actccgttcctgcagcagcaacagttccccttcatagaagacaactacgaggtcatccag
aggtcccaggacctggacaatgttttgtcacgtttggatccactggctgcgagtcaacac
tttgcagccatccaacgctggaaagcaaagagagagatggcctgtccacgcagaggagcg
ttcctgttgtattctcagaagaagttggccaaactaaaagaggccgaacaagcggcaggg
ccagatgtctgcggcagagctgctgctgtcctgcagctggctcagcagtggtattccctg
gatgattatagcagatcaaaatacagcagaaagaccttgcgctgtcccgagccctcgctg
ggcttgctcagaccagacgtctgctttgggtcagtgtctgagaacttccacagaatcaca
gagaaatatctgcagagcagaagcacgacgagtcaagataaagtcgacatccacagcctg
cgccggctgttgcactataaatggcagcgttcactgtgtgacccgggggaagcggtgggt
ctgctggctgctcagtccataggtgagccctccacccagatgaccctcaacaccttccac
tttgctggcagaggagagatgaacgtgactttgggaatacctcggctgagagaaatcctg
atggtggccggctccaacatcaaaactcccatgatgagcgttccagtcctgaacaacaag
aaagccttaaagagagcaaagactctgcgtaagaagctcaccagggtgtgtctggctgag
gtcctgcagaaagtggatgtgctggagtcactgagggtagaaggacaccaaaggcagcgg
tcattcaaggtcacgttccacttcctgcctcctgatcgctactgtgacgataaattgctt
tcgccccatcagatcctgcactacatggaaataagatttttccgtctccttcttgaggca
atcaagaagcgcagtgcaaagcttgcctccatcgccgtggagacaagaaaggcgacgcct
ggagacaatgataatgatggaatggcaaacacagcagggttagatgacggggaagaagaa
gaggagagggagattgttgatgaccagggggacgaaggagatgctgacgcttcagacgcc
aagagaaaaggcaaacaggaagaggaggtggactatgagagtgaggaggaggacgatgga
gaagaagaggacgtggaagataaaaacaaaccgatggaggatgaatgtgaggaggaaaca
cgagacaggtcgatgctgccagagtctgaggaaaagaagaagaagaagaagaagaggaaa
gagacaaagaaaggtggaggagaagaggccatgagtcagatgagagtcaacactgttctg
cagacgcacacagcgatagaaagatactgctacgatcacgagcatgaactctggtgtgag
gtggacctggtcttaccggtcagcaaggtgcactttgacctgacctcagtacttacaaca
gtggcccagaacgctgtcatcatggagaccaagggcctgactcgctgtctgctgagtgag
gccacgacaaagacgggagaaaaagagactgttctcaacacagagggcatcaacatgcac
gagatgttcaagtacagtgacattttggacattaacagactgtactctaatgaggtccat
gccatggctaacacctatggcattgaggttggtctgaaggtcatagagaaggagatcaaa
gatgtctttgctgtctatggtatcgaggtggaccccagacatctgtctctggtggcggac
tacatgtgttttgaaggtgtatataaaccgttaaaccgacacgccatcaggtccaactcc
tctcctctccagcagatgacctttgagaccagttacaagttcctcaaacaggccaccatg
ctggggtctcatgatcagctggtgtcaccgtcggcttgcctggtggtggggaaggtcgtc
cgaggaggaactggactgtttgaactgaaacaaccgctgcagtcggagaactga
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integrated database retrieval system
