Solea senegalensis (Senegalese sole): 122778905
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Entry
122778905 CDS
T07721
Symbol
si:ch211-114c17.1
Name
(RefSeq) pre-mRNA-processing factor 39
KO
K13217
pre-mRNA-processing factor 39
Organism
ssen
Solea senegalensis (Senegalese sole)
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssen03041
]
122778905 (si:ch211-114c17.1)
Spliceosome [BR:
ssen03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
122778905 (si:ch211-114c17.1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_11
UTP6_C
HrpB1_HrpK
RsmJ
GAT
TPR-S
Ras_bdg_2
Motif
Other DBs
NCBI-GeneID:
122778905
NCBI-ProteinID:
XP_043896990
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All DBs
Position
LG12:complement(7485950..7496715)
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AA seq
729 aa
AA seq
DB search
MAAEGGEELSGNGDFEESSAMEASEVPPPPPIEMVEMSEEDNSAAAASEAPAGLDPAPFS
IPQAADEEEGGLPADFERLWKASNDNPQDFTSWTDLLQYCEQENHITASRQALEAFLTRY
PLCYGYWKKFADLERRAGYNSKAEEVCVKGLQAIPLSVDLWIHYINLLLGTLDMNLPESP
QRIRSVFEDAVVAAGLEFHSDRLWDLYVEWEKEQGNMRNAAAVLDRVLKVPTQLYNTHYD
KFKEHLNSHEPKEVLSPEEYEELRTLCRQSQKAERAEQAQEEKQERPPGEEDPSTPEGTD
SEELIQKIREQVLLGRDKVYQDNEGEVRQRWNFEDSIKRPYFHVKSLDRLQLRAWHSYLD
WEIAHLNTDIKAHDQDSNQVATEGSEVTAQPSEVLEAATIVKDDRRVRILFERCLIACAL
YEEFWTRYIQYLEPQSVEEARALYKRACEIHLPHKPNIHMQWATFEERHGDLTEARRVLE
ALERNLPGLAVVRLRRAALERRAGHLDLSESLLQEAVAESKEKPTMHAFYSIKLARMLQK
LGRNPISARKVLQEALEISPDNDKLHLNLLELEVSGDPWASAEAVQECVTRALAAPLTPH
TKILLSQRGLQFAEDYSNSIQSVLSVYEEHQKLLKELGGTKREAENGEEEDPEKLIKSED
GSPVAVSAQVPPTMPHIPITTPPPPVVGSDVSAQTGYGGYGNWYQQSQYGSYGYGNNTWN
YNQGYYPPS
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggaaggcggtgaggagctgagcggcaacggggacttcgaagagtcttcagcc
atggaggcttctgaagttcctccaccgcctccaattgagatggttgagatgtctgaagag
gacaacagtgctgccgcagcctctgaagctcccgcgggcctcgaccctgctcccttttct
atacctcaggctgcagatgaggaggagggaggactgcctgctgactttgagcgtctgtgg
aaggcttccaatgacaatcctcaagactttaccagctggactgacctgctgcaatactgt
gagcaagagaatcacatcacagcgtcacgccaagcattagaggctttcctcactcgctac
ccactctgttatggctactggaagaaatttgcagatctggagcgtcgtgcaggatacaac
agcaaagcagaggaggtttgtgttaagggtctccaagcaattccactgagtgtagatctg
tggatccactacatcaatctgctgctgggcactctggatatgaacctgcctgagtcgcca
cagcggattcgcagtgtgtttgaggatgcagttgtggcagcaggtctggagttccactca
gacaggctttgggatttgtatgttgagtgggagaaagagcaggggaacatgaggaacgca
gcagccgtcctggacagagtcctcaaagtccccactcagctctacaacacacactatgac
aagttcaaggagcatctgaacagccacgagcccaaagaggtgctgtccccggaagagtac
gaggagctgaggacgctgtgtcgtcagagtcagaaggcagagcgtgctgaacaggctcag
gaggagaagcaggaaaggccgccaggggaggaagatccctccacacctgagggcaccgat
tcagaggaactgatacagaagataagggaacaggtgctgcttggtagggacaaagtctac
caggacaacgagggagaagtccgccagagatggaactttgaagattcgattaagcggcca
tactttcacgtcaagtcactggatcgccttcagctccgagcctggcactcctacctggac
tgggagattgcgcacctaaatacagacatcaaagcccatgaccaagattcaaaccaggta
gccacagaggggtcagaggtaacggctcagccttcagaagtgttggaagcggccacaatt
gttaaggacgaccgcagggttcgcatcctctttgagcgttgtctgatcgcttgtgctctc
tatgaggagttctggaccaggtatattcagtacctggagccacagagtgtggaagaggcc
cgagctctttacaaacgagcctgtgagatccacttgccacacaaacccaacatccacatg
cagtgggccaccttcgaggagaggcacggtgatttaactgaggctcggcgagtgctggag
gcgctggagagaaatctgccggggttggcagtggtccgcctccgccgggctgctctggag
agacgagcaggccacctggacttatcagagtccttgctgcaggaggcggtggctgagtcc
aaagagaagcccacaatgcacgctttctactccataaagctggcacgcatgctgcagaaa
ctgggcaggaaccccatcagtgcccgcaaggttttacaggaagcgctggagattagtccg
gataatgataaactgcacttgaacctgttggaactggaagtgtcaggagacccctgggcc
tcagctgaggcagtgcaggagtgtgtgacgcgagctttggcagctcctcttaccccccac
accaagatcctcctctcacagagaggcctgcagtttgcagaggactacagcaactccatc
cagagtgtgctgtctgtgtatgaagaacatcagaaactgttgaaggagcttggtggtaca
aagagagaagcagaaaatggggaggaggaggatccagagaaactgatcaagagtgaggac
ggctctcctgttgctgtatctgcacaagtcccacccaccatgccacacatccccatcacg
acgccccctccgcctgtggtaggctcagacgtgagcgcacagaccggctatgggggatac
ggcaactggtaccagcaatcacagtatggcagctatggctatggtaataacacctggaac
tacaaccagggctactaccctcccagctaa
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