Solea senegalensis (Senegalese sole): 122778964
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Entry
122778964 CDS
T07721
Symbol
nxf1a
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03008
Ribosome biogenesis in eukaryotes
ssen03013
Nucleocytoplasmic transport
ssen03015
mRNA surveillance pathway
ssen05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122778964 (nxf1a)
03015 mRNA surveillance pathway
122778964 (nxf1a)
03008 Ribosome biogenesis in eukaryotes
122778964 (nxf1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
122778964 (nxf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122778964 (nxf1a)
03009 Ribosome biogenesis [BR:
ssen03009
]
122778964 (nxf1a)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
122778964 (nxf1a)
mRNA cycle factors
Stress granule specific factors
122778964 (nxf1a)
Ribosome biogenesis [BR:
ssen03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
122778964 (nxf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
LRR_8
UBA_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
122778964
NCBI-ProteinID:
XP_043897071
LinkDB
All DBs
Position
LG12:7768875..7779421
Genome browser
AA seq
670 aa
AA seq
DB search
MDRRGIWFQRCFRNLVVTRMVNDDQGDFLARRDVRSTDIMIPREHDDRTGPQFRNRKGRS
YNRGGMHDRSRRDRQRGGHSSDFGGPGPRSRLDDNDGDVTMSDSSSQDGSQYRSHPYRPP
HRKGDVRFRDRRPGKGGGGRGGGGFRDRGGGGGSGGGGGGGGRNQSGWSKVTIPHGRKYD
KKWLLTALQNICSVTFTPVQFHVDHDRAHFYVDDAPAAFALRKCSHKITDTDGYKVEVHV
NPHAPPAFLASDLKSEHLEHLKQCMGKRFDASQQSLDLNNIRTDPDLVSQKIEVTLNRKT
HMEAVISVIAGHIPELACLNLSNNRIHKLDELAELVTKVPNLKVLNLSHNELKSDRELDK
LKGLKLVELWLNRNPLCGYFKDQASYISAVRQRFPRLLKLDGQDLPPPIGFDVETPTTIP
PCKGSCFGSEEIKAPILGFLQQYYSIYDSGDRQPLLDAYHDGASLSLTTPYSTQNPSRSS
LGEYHKDTRNLKRIKDTTMRFRLLKHTRLNVVAFLNELPKTQHDIASFTIDVNTCTNTLL
SFTVSGVFKEVAVDGKSRDSTMAFSRVFVTVPAGGSGLCIVNDQIFIRMATTEEIRRAFV
APAPTPSSSPVPTLTAPQQEMLTAFSQKSGMNLEWSQKCLQDNEWDFNRAAQIFTQLKTK
GQIPDVAFIK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggatagacgcgggatttggttccagagatgcttccgcaacctggtggtgacacgtatg
gtgaatgacgaccaaggagattttttggcgagaagagatgtcagaagcactgatatcatg
atcccacgagagcacgatgacagaaccggaccacagtttcgcaaccgaaagggcagaagc
tataacagaggtggtatgcatgaccgctctcgcagagaccgccagcgaggaggtcactcc
agtgattttggtggtcctggaccgcggtccaggcttgacgacaatgatggagatgtaacg
atgagtgatagtagctctcaggatggctcccagtacagatcacacccatatcgcccacct
catcggaaaggagatgtgcgatttagagacaggcgtccaggaaaaggaggaggtggaaga
ggaggtggtggcttcagagacagaggtggagggggtggcagtggaggaggaggtggagga
ggaggaagaaaccagtcgggctggtctaaagttacaataccacatggaaggaaatatgac
aagaaatggttactgaccgctcttcagaacatctgttcagttacctttacacctgtacag
ttccatgttgaccacgatagggctcatttctatgtggatgatgcccctgctgcctttgct
ttacgtaaatgttctcacaagattacagacacggatggttacaaggtggaggttcacgtc
aacccacatgctccaccagccttccttgcatctgacttgaagtctgaacatttggagcac
ctaaagcaatgcatgggaaaacgctttgatgcctcccaacagtcgcttgacttaaacaac
atccggacagacccagacctggtgtcccaaaaaattgaagtcaccttgaatcggaagact
cacatggaagctgtcatatcggttattgcgggacacattccagagctggcctgcttaaac
ctgagcaacaaccgcattcacaaactggatgaacttgctgaattggtcacaaaggtgcct
aatctgaaagttcttaacctctcccacaatgagctaaagtcagaccgagagctggacaag
ttgaaagggctgaaactggtggagctgtggctaaacaggaacccactgtgtggctacttc
aaggaccaggcttcatatatcagtgctgtgcggcagaggtttccccggcttctaaaactg
gatggtcaagatctacccccacctattggatttgatgtagaaacaccaaccacaattcct
ccttgcaagggcagctgttttggatctgaagaaatcaaggctcccattcttggcttcttg
caacagtactacagtatatatgactctggtgacaggcagcctcttctggatgcttaccat
gacggagcatcgttatcccttacaacgccttactctacccagaacccctccaggagcagt
ctgggagagtatcacaaagacactcgaaacctgaaaaggatcaaagacaccacgatgaga
tttagattgctgaagcacacgcgactgaatgtggtggctttcctcaacgagttgcccaaa
acgcagcatgacatcgcctcctttactatcgacgtaaacacctgcacaaacacgctactg
tcattcacagtgagtggtgtcttcaaagaagttgctgttgatggtaaatcccgagactcc
accatggccttctctcgggtttttgtcacagtcccagcagggggttctggtttgtgcatc
gtgaacgaccagattttcatccgaatggccacaacagaggagatccgccgtgcctttgtg
gctcctgccccaactccatcttctagccctgtacccactctcactgcaccacagcaggag
atgctgactgccttctcacagaagtctggcatgaacctggaatggtcccaaaaatgtttg
caagataatgaatgggatttcaaccgagctgcgcaaatcttcactcagttaaagactaaa
ggccagatccctgatgtggcgttcatcaaatga
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integrated database retrieval system
