Solea senegalensis (Senegalese sole): 122779190
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Entry
122779190 CDS
T07721
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
122779190 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssen03400
]
122779190 (lig3)
Enzymes [BR:
ssen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122779190 (lig3)
DNA repair and recombination proteins [BR:
ssen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
122779190 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
BRCT_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
122779190
NCBI-ProteinID:
XP_043897255
LinkDB
All DBs
Position
LG13:6082569..6105192
Genome browser
AA seq
1021 aa
AA seq
DB search
MQVPQRVLALKTVCAGVQSLQRPVRTWRLRKVCRSSPGSSCFVLQSPPVSVSTFSREFCH
FPLVFHKHILFRNHPPLVSPHQCFSDEPDMAEQRFLVEYAKRGTAGCKKCKDKIAKGIVR
IGKVVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDEDKELVN
KHVSALMAKVNASPKKKVQAKLNTGQLMAPPADPSVNAPRKFSGFTAAKAGSSSGAGPSS
SSSSPAKASQGSPLSIQMCDPQHKDCLLREFRKLCAMVAENNSYNAKTQIIEKFLRKGSG
GDKFHGDLYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFRANQDDMVRDLEQGDVSETVR
MFFDDSKSFPPAAKSLLTIQEVDASLTRLAQLTKEDEQQTELEAIAKKCTSNDLKCIIRL
IKHDLKMNSGAKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQEASNGSGQRKLLTVEA
SLMTPVQPMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGDVFSYFSRSLKPVLP
HKVAHFKEYIPQAFPGGHSMILDAEVLLIDTNTSKPLPFGTLGVHKKAAFQDAKVCLFVF
DCIFFNGVSLMERPLRERRKFLDDNMVEVPNRILFSEMKHVTRAGDLAEMITRVIREGLE
GLVLKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGC
YDPDSKKWCTVTKCSGGYDDAMLARLQKELDMIKISKDPSKIPGWFKVVKNYYPDFLIRD
PQRAPVWEITGAEFSKSEMHTADGISIRFPRMTRVRDDKDWKSATNLHQLKELFRISKEN
CDFKVTAGPSTSNDDKGSSGGDSSDRNSPPPPTPPSLAHGKAPPKKPGNSVTPKAKVAAK
SQPRSPAPEQPAAKKAKKSENVYSNGQTKTTAAKSRLLEPRNDKTLLDIFSGVKLFLPDS
TQDFDKLRRYFVAYDGDLVPDYDAALATHTMAEPEENSRAERVTPSWIWQCIRKRRMVPP
C
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtacctcaaagagtattagctcttaaaactgtgtgcgcaggtgtgcagagtctt
caaagacctgtgaggacttggcgactccggaaagtgtgcagatcctctcctggctcttca
tgctttgtacttcaatctccacctgtatctgtgtctactttttccagggaattctgtcat
tttcccctggttttccataaacacatcctcttccgaaaccaccctcccctggtttccccg
catcagtgtttctctgacgagccagatatggcggaacagaggttccttgtggaatatgcc
aagcgcggcacagcagggtgtaagaagtgcaaggacaaaattgcaaagggcatagtgcgc
atagggaaggttgtgcccaacccgttcagcgaatctgcaggagagatgaaagagtggtat
cacgtgaaatgtatttttgagaagctagaaagggcccgagccaccacgaagaaaatcgag
gacatcacagatttggaaggatgggaggaactacaggatgaagacaaggagctcgttaat
aaacatgtttcagccctgatggccaaagtcaatgcaagtccaaagaagaaagtacaagcc
aagttaaacactggccaactgatggctccccctgctgacccgtctgtcaacgcaccgcgc
aagttttcaggcttcacagcggcgaaggctggctcttccagcggtgcaggaccatcgtcg
tcttcctcttcccccgccaaagccagtcaaggtagcccgctgtccatccagatgtgcgac
ccccagcacaaggactgcctcctcagagagttccgaaagctctgcgccatggtggcagaa
aacaacagctacaatgccaagacgcagatcattgagaagtttctgaggaaaggctctggt
ggagataagttccatggagacctttaccttacggtgaaactgctgctgccgggcgtcata
aaaagcgtctacaacctgaacgacaagcagatcgtaaaactcttcagccgcatattcaga
gccaaccaggacgacatggtgcgcgatctggagcagggcgacgtatctgagacggtgagg
atgttcttcgacgatagtaaatcgttccctccggctgccaagagcctgctaaccatccag
gaagtggacgcctccctgacccgcctcgcccagctgaccaaggaggacgagcagcagacc
gagctggaggccattgccaaaaaatgcaccagtaacgacctgaaatgcatcattcgacta
attaaacatgacttgaagatgaactctggagcaaaacatgttttggatgccgtggatcca
aacgcatacgacgccttcaaggcctctcgtaatctgggcgacgtgatcgagcgtgttttg
aggaatcagcaggaggcgtccaacggttcgggacagaggaaactcctcactgtggaggct
tcgctcatgaccccggtccagcccatgttggcggaggcgtgtaaatccatcgagtacgcc
atgaagaaatgccccaacggcatgtactcggagatcaagtacgatggcgagcgcgtgcag
gtccataagaacggagacgtcttcagctacttcagccgcagcctcaaacctgtgctgccg
cacaaagtggctcatttcaaagaatacatccctcaggcttttcctggcggtcacagtatg
atactggatgctgaagtcctgctcatcgacacaaacaccagtaaacccctgccctttggg
accttaggcgtccacaagaaagcagcatttcaggatgccaaagtgtgcctgtttgttttc
gactgcatcttcttcaacggtgtgagtctcatggagaggcctctgcgcgaacgcaggaag
ttcctggacgacaacatggtggaagtgccaaacaggatcctgttctctgagatgaaacac
gtcacaagagcgggagatttggctgaaatgataacgcgcgtcatcagagaaggacttgaa
ggcctcgtgctaaaagatgttaagggaacctatgaacctggaaaacgccactggctgaag
gtgaagaaagactatttgaacgagggagcgatggcggacacggctgacctggtggtgctc
ggggctttctacggaaaaggctccaacgggggcatcatgtccagcttcctcatgggctgt
tacgacccagactcaaagaagtggtgcacggtcaccaagtgctccggaggctacgatgac
gccatgttggcccgactccagaaggagctggacatgatcaaaatcagcaaggacccgagc
aaaatcccaggatggtttaaagtcgtcaagaactattatccagatttccttatccgtgat
ccgcagcgcgcgcccgtgtgggaaatcacgggtgccgagttctccaaatcagagatgcac
acagctgacggcatctccatacgcttcccgcgcatgacgcgagtccgcgacgacaaggac
tggaagagcgccaccaacctgcaccagctcaaagagcttttccgcatctctaaggagaac
tgtgactttaaagtgaccgcgggaccgtcgacatccaacgacgacaaaggttcgtcggga
ggcgacagcagcgacaggaattcaccgccaccgccaacgccgccatcgttggcccacgga
aaagctcctcccaagaaaccaggtaacagtgttacacctaaagcaaaggtggcggcgaag
tcgcagcctcgatctccggcccctgagcagcctgctgccaaaaaggcgaagaagagtgag
aacgtttacagtaacggacaaacaaagacaacggcggcgaagtctcgactgctggagccg
cgaaacgacaagactctgctcgacatcttcagcggtgtgaagctcttcctccccgactcc
acgcaggacttcgacaaactgcggcgatactttgtggcgtacgacggcgacctggtgcca
gactacgacgccgccttggcgacgcacaccatggcggagcccgaggagaacagcagggcg
gagagggtcacgcccagctggatctggcagtgcatccgcaagagacgcatggtcccgccc
tgttaa
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