Solea senegalensis (Senegalese sole): 122779510
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Entry
122779510 CDS
T07721
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122779510 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssen03041
]
122779510 (ddx46)
Enzymes [BR:
ssen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122779510 (ddx46)
Spliceosome [BR:
ssen03041
]
Complex A
U2 snRNP components
U2 related factors
122779510 (ddx46)
Complex B
122779510 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
122779510
NCBI-ProteinID:
XP_043897880
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All DBs
Position
LG13:21282644..21310922
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AA seq
1066 aa
AA seq
DB search
MGRESRHYRKRSSSRGRSGSRSKSRSPDKRSKKDDRDRDRSRRERSRSRDRRKSRSRDRK
RPRRSRSRDRRRSSRSRDRRRSRSRSRTRRSRSNSPNKSRKTDEKSRSKEKDNIDPLSDK
KKAKEEKEDEKVEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELEEMKQ
GKKWSLEDDDDDDDDGSAPIEGDDDEDLEGKEERNESEIKEEKKEEGEKEMETPELQEAE
EDDVDPLDAYMEEVKQEVKKFNMGGMKGNDKKGAMTVTKVVTVVKTKKGPHTHKKKGELM
ENDQDAMEYSSEEEEVDLQTALTGFQTKQRKVLEPVDHGKIQYEPYRKNFYVEVPELMRM
TQEDVNAYRLDLEGITVKGKGCPKPIKTWVQCGVSMKILNAMKKHSYEKPTPIQAQAIPA
IMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEEAEGPISVIMTPTRELALQITKEC
KKFSKPLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVTY
VVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILAKPIEVQVGG
RSVVCSDVEQHVLVIDEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADALLKDLMKASYP
CMSLHGGIDQYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVVNYNCPNHYEDYVH
RAGRTGRAGNKGYAYTFITEDQVRYAGDIIKALELSGSPVPPELEQLWASFKDQQKAEGK
TIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESMFNSKK
RVKDLSAPGAASGASGAVATSTSATSGGGLPGLGPTSAGNIQKLEMAKRLALKINAQKNL
GAEAQDVMQQATNAVLRGGTIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQAAEQ
AETVRRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERK
IYLAIESANELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtgagtcgagacactacaggaagcgctcctcgtctcgtggacggtcaggtagc
cgatcgaagagtcgctcaccggacaaacgttccaagaaagacgaccgcgaccgagacaga
agccggagagagaggtcacggagccgggaccgccgcaagtcccgctcccgagacagaaaa
cgaccaaggcggtccaggagtagagacagaaggaggtcatccaggagcagagacagacgg
aggtcaaggagcagaagcagaacccgtaggtctcgatccaacagccccaacaagagcaga
aaaacagatgaaaaatcaaggagcaaagaaaaagacaacatcgatcctttatctgacaag
aaaaaagctaaagaggagaaagaggatgagaaggttgaggatcaagactttgaccagaac
aaactggaggaggagatgaggaagaggaaggagcgagttgagaagtggagggaagagcag
aggaagaaggccatcgaaaacattggcgagatcaagaaagagctggaggagatgaagcag
ggcaagaagtggagcttggaggatgatgatgacgacgacgacgacggttcagcaccaata
gagggagatgatgacgaagatttggaagggaaagaggagagaaacgaaagtgagataaaa
gaggagaagaaagaagagggagagaaagagatggagactcctgagttacaggaggccgag
gaggatgacgtcgatcctctggacgcttacatggaggaggtgaagcaagaggtgaagaag
ttcaacatgggaggaatgaagggaaacgataaaaaaggagctatgaccgtaaccaaagtg
gtgactgttgttaaaacaaagaaaggaccccacactcacaagaagaagggtgagctgatg
gagaatgatcaggacgccatggagtactcatccgaggaggaggaggtggatctgcaaacg
gctctgacaggtttccagaccaaacagaggaaagtattggagcctgtcgatcacgggaag
atccagtacgagccgtaccgcaaaaacttctatgtggaggtgcctgagctgatgaggatg
actcaggaagatgtgaacgcatacaggttggacctggaaggcattactgtcaaagggaag
ggctgccctaaaccaatcaaaacctgggtgcagtgcggggtctctatgaagatcctcaat
gctatgaagaagcacagctatgagaagcccaccccaatccaggcccaggccattcctgcc
atcatgtctggccgagacctcattggcatcgccaagactggcagtggaaaaaccatagcc
ttcctgttacccatgttcagacacatcatggaccagaggcccctggaagaagcagaggga
ccgatctctgtaataatgactccgacaagagagttggcgctgcagatcaccaaggagtgt
aagaagttctctaaaccgctgggactcagggtggtgtgtgtttatggtggcactggtatc
agcgaacagattgctgagctgaagagaggagcggagatcattgtgtgcacaccagggaga
atgattgacatgctgggggccaacagtggtcgagttaccaacctgcgcagagtaacctat
gtggtgctggatgaagcagacagaatgtttgacatgggctttgagccgcaggtgatgcgt
attgtggacaacgtgcgtcctgaccgtcaaacagtcatgttttcagctaccttccccaga
gccatggaggccctggctcgcaggatcctggctaaacctattgaggtccaggtggggggc
cgcagcgttgtgtgctctgatgtggaacaacatgtgctggtgattgacgaggacaagaag
ttcctgaagctcctggagattctgggtcactaccaggagaagggttcagtgattatcttt
gtggacaaacaggagcatgcagacgcactgctaaaagacctgatgaaagcctcataccca
tgcatgtcactccatggaggaatcgaccagtatgacagagacagcatcatcaatgacttc
aagaatggagcttgtcgtctgatggtggccacctccgtggctgctcgaggcctggacgtc
aagcagctgatcttggtggtcaactacaactgtcccaaccactacgaggactacgtccac
agagccgggcgcacgggccgagcgggtaataagggatacgcctacaccttcatcacagaa
gaccaggtccgctatgccggtgacatcatcaaagccttggagctgtcggggtctcctgtc
ccaccagagctggagcagctttgggcctcgttcaaagaccaacagaaagcggagggtaag
accattaaaagcagcagtggcttctcagggaaaggcttcaagttcgatgagacggaacat
gctctggccaatgagaggaagaagctgcagaaagctgctctcgggctgcaggactctgat
gatgaggacggtgcgctggatattgaagagcaaatcgagagcatgttcaactccaagaag
agagtgaaggatctgtctgctcctggcgcggcctccggggcctccggcgctgttgccacc
tccacatcggccacctcaggaggaggactgccaggtctgggacccacatctgcgggaaac
atccagaaactggagatggccaagaggctggcgctcaagatcaacgctcagaaaaatctg
ggagcggaggctcaggacgtgatgcaacaggccacgaatgccgtcctgcgcggcggcacc
atcatgacgccctcggtgtctgccaaaaccatcgcggagcagctggctgagaagatcaat
gccaagctgaactacacccccgtggagaagctggaagaggagcggcaggcagctgaacag
gcagagactgtcaggagatacgaagaggagctagagataaacgacttccctcagactgcc
agatggaaggttacatctaaagaagctctgcagaggattggtgaatactctgaagctgca
atcaccatcagaggaacctatttccctccaggcaaagagccaaaggaaggagaacgcaag
atctacctggcaatagagagcgctaacgaactggctgtgcagaaagccaaaacagagatt
acgaggttaatcaaggaagaacttatcagattacaaaattcctaccagccaacgagcaaa
ggtcggtacaaagtgctgtag
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integrated database retrieval system
