Solea senegalensis (Senegalese sole): 122779552
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Entry
122779552 CDS
T07721
Symbol
pcdh1a
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
122779552 (pcdh1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ssen01009
]
122779552 (pcdh1a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssen04515
]
122779552 (pcdh1a)
Protein phosphatases and associated proteins [BR:
ssen01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122779552 (pcdh1a)
Cell adhesion molecules [BR:
ssen04515
]
Cadherins
Protocadherins
122779552 (pcdh1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
RET_CLD1
Fibulin_C
Motif
Other DBs
NCBI-GeneID:
122779552
NCBI-ProteinID:
XP_043897957
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All DBs
Position
LG13:15550661..15671592
Genome browser
AA seq
1190 aa
AA seq
DB search
MELTLQVGILWVLVLHCGSAKGSILYRVQEEQPPNSLIGSLAADQGLPDSGHLYKLEVGA
PYLRVDGKTGDIFTTEIPIDRETLRDCRTLAKGKPCYLEFEVSVTDLIQNQSPRLIEGRI
EVQDINDNTPQFPSSVLTISVPENTIMGALFSIPLATDRDSDRNGVADYALTAGPDAATL
FGLQVADDRGGKLPQLIVLGNLDRELKDSYDLTIKAVDGGNPQRYSSALLRVVVTDANDN
APKFEKSTYDAEVSENSPAGHSVLQVKANDSDMGPNGEIEYTLHQAVDPVPRLLQIDHSS
GIIYVKGSLDREEISSLSFYVMAKDKGPQPKSSKTFVTIEVTDQNDNAPAVEIRGIGLVT
HSKGVANISEDMPVGTAVALVQVSDKDEGENAVVTCVVAGDVPFQLRPASDSSSDNKRKY
FLQTTTPLDYERVRDYRVEIVAVDSGNPALSSTNSLKVQVTDVNDNSPIFSPNLFEVDFA
EENQPGEKVLDVTASDADSGTNAELLYNILADSSIKGLFEIDPNTGEVRARSPLDREHKE
RYEFRVTAADKGSPVHKGTATVVIKVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGMVTV
MDADKGENARVQLSVEPDGGKFVVQNGTGTILSSISFDREKDSSYTFRLKAVDGGEPPRS
SYVGVTINVLDENDNDPVVTKPSNSSYRHLSPLASPDSHVEVVEAEDLDSGPNAELVFSI
AGGNPYQLFRISPSSGEITLAKEMTRKHGGLHRLVVRVSDRGKPARHTIALVHIYVNETI
SNVSLVEALVGHSLYTPLDRDIAGDPDNGFAAQRSNILFGSLAGVAGVVMLILVVVFIRH
RIQRETKSGYQAGKKETKDLYAPKQVPKNAKGKRGRKGKPQKSPKPLGEDEEVSLQKSLK
FNLDGVNDSPRIHLPLTYSPGSPDIGRHYRSNSPLPSIQLQAQSPSASQKHQAVQDLPAA
NTFVGTGGDDNSTGSDQYSDYSYKTSQPKYNNKQHPHRRVTFSTTNPVQDLQDASQHSYY
DSGLEESETPSSKSSSGPRIGPLTLPEDHYERTTPDGSIGETEHPENDIRSLPDVAMTGN
CTPECSELGHSDACWMPGHPSPVRKTRNPPKLSTFVPYQERGSLGRLANGSARLGGEEHR
SRLPPSRSAYSSGGHDASQDCPLEEVPLSAASEFPPTSPPAHTPKREIYL
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggaactaactttacaagtagggattctttgggtcctggtgctgcactgtggctctgct
aaaggcagcatcctgtaccgggtccaagaagagcagcctccaaactctcttataggtagt
ttggcagcggaccagggactacccgactcgggtcatctctacaagctagaggtgggtgcc
ccttacctgcgtgttgatgggaagacgggcgacattttcaccacagagattcccatagac
cgagagactctgagggattgtcgaaccctggccaagggtaaaccctgctatctggaattt
gaagtatcagtaacagatctgatccaaaatcagagcccacggctcattgaaggacgtatt
gaggtacaagacatcaatgacaatacgccacagttcccctcttctgtgcttacaatctct
gtcccagagaacaccatcatgggggcgctgttctccatacctttggctacggacagggac
tcagacaggaacggggtagctgactatgctctgactgcagggcctgatgcagcaacactg
tttggcttacaagtagcagatgacaggggagggaagctcccccaactgatcgtccttggc
aacttagatcgtgagctgaaggattcctatgatctcaccatcaaggcagtggatggagga
aaccctcagcgctacagcagtgctctgctcagagtggtggtcactgatgccaatgacaat
gctccgaagtttgaaaagtccacatatgacgctgaagtttcggagaacagcccagcgggt
cactctgttttacaggtcaaagcgaatgactcggacatgggccctaatggagaaattgag
tacacccttcatcaagcggttgatccagtgccgaggctcttacaaatcgatcattcctcc
ggtatcatctacgtgaaaggatcgctggacagggaggaaatcagcagcctatccttctat
gtgatggcaaaggataagggccctcaaccaaaaagctccaagacatttgtaaccatcgag
gtgacagaccaaaatgacaacgctccagctgtggagattcgtggaatcggtcttgtgacc
catagcaaaggagtggcaaacatttccgaggatatgccagtgggaacagctgtagctttg
gtgcaagtgtctgacaaggatgagggagagaatgccgtggtcacatgtgtagttgcggga
gacgtgcccttccagctccgccctgccagtgactcatccagcgacaacaagaggaagtat
ttcctacagactacaactcctcttgactatgaaagggtgagggattaccgggttgaaatc
gtggctgtggattctggaaacccagcattgtctagtaccaattccttgaaggtgcaggtg
actgacgtgaatgataactctccaatattctccccaaacttgtttgaggttgattttgct
gaagaaaaccaaccaggggagaaggttttggatgttacagcttcagatgcagacagtggt
actaatgctgaacttctttataatatactggcagactcatccatcaaaggtctctttgaa
attgacccaaatacaggggaagtgagagcccggagcccactggatcgtgagcataaagaa
cgttatgaattccgtgtcacagcagcagataaaggatcacctgtgcataaaggaactgca
actgttgtaataaaggtgcttgaccgcaatgacaatgaccccaagtttatgcttagcggc
tacagcttttctgttttggaaaacatgcctccactcagtccagtcggtatggtgacagtt
atggatgcagacaaaggcgagaacgctcgcgttcagctctctgttgagccggacggagga
aagttcgtcgttcaaaatggaacaggcaccattctctcaagcatctcgttcgacagggag
aaagacagcagctacactttccgtctcaaagcagtggatggaggagaacctcctaggtcc
tcatacgtgggtgtcactatcaacgtattggatgaaaatgacaatgaccctgtggttacc
aaaccctccaattcctcctatagacacttgtcgccgctagcttctccagatagccatgtg
gaagtagtggaagctgaagatttggacagtggacctaacgcagagttggtcttcagtatt
gctggtggaaacccttaccagttatttcgaatctccccttccagtggtgagatcactctc
gcaaaggagatgacccggaaacatggtggactacatcgcctagtggtgcgagtgagtgac
aggggtaaacctgcacgtcacaccattgccctggttcacatttatgtcaacgaaaccatt
tcaaatgtcagtttagtcgaagctctagtaggacacagtctttacactccactggacagg
gacattgcgggtgatcctgacaatggttttgctgcacagcgtagtaacattctgtttgga
agccttgccggagttgcaggtgttgtcatgttgatcttggttgtggtatttattagacac
cgcatccagagagaaactaaaagtggttaccaggctggtaaaaaggaaacaaaggacttg
tatgcacccaaacaagtaccaaagaatgcaaagggcaagcgcggacgcaaaggaaaaccc
cagaagtcaccaaaaccacttggggaggacgaggaggtcagcctgcaaaagagtctcaag
tttaacctcgatggggtcaatgacagccccaggatacatctgcccttaacatactcacca
gggagccctgatataggcaggcactaccgctccaactccccacttccctccatccagctg
caggcccagtcaccctctgcctcacagaagcatcaggccgttcaggacctgcccgctgcc
aacaccttcgtgggaacgggaggagacgacaactcgactggctcagaccaatactctgac
tacagctacaagaccagccagcccaagtacaacaacaaacagcatcctcatcggcgggtg
accttctccaccaccaaccccgtgcaggacctgcaggatgcctctcaacacagctactat
gacagtggcttggaggaatcagagactcccagcagcaagtcatcatctggtcctcgcatt
ggacccctgaccctgcctgaggaccactacgagaggaccactccagatggaagcatcgga
gagactgaacacccagaaaatgatatccgctccctccctgacgtggcgatgactggaaac
tgtacgccggagtgcagcgaactgggccactcagacgcctgctggatgccggggcatccc
tcccccgtacgcaagaccaggaatccacccaaactctccacctttgtgccttaccaggag
agagggagcctgggtcgcctggcgaatgggagcgccaggctgggtggcgaggagcaccgg
tcgcgccttccgccctcccgcagtgcctattccagtggtggtcacgacgccagtcaggac
tgccccttagaggaggtgcccctcagcgcggcctccgagttcccgcccacctccccgcct
gcccacactcctaaaagggaaatctacctgtga
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