Solea senegalensis (Senegalese sole): 122779791
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Entry
122779791 CDS
T07721
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03030
DNA replication
ssen03420
Nucleotide excision repair
ssen03430
Mismatch repair
ssen03440
Homologous recombination
ssen03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122779791
03420 Nucleotide excision repair
122779791
03430 Mismatch repair
122779791
03440 Homologous recombination
122779791
03460 Fanconi anemia pathway
122779791
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssen03000
]
122779791
03032 DNA replication proteins [BR:
ssen03032
]
122779791
03400 DNA repair and recombination proteins [BR:
ssen03400
]
122779791
Transcription factors [BR:
ssen03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
122779791
DNA replication proteins [BR:
ssen03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
122779791
DNA repair and recombination proteins [BR:
ssen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
122779791
MMR (mismatch excision repair)
122779791
DSBR (double strand breaks repair)
HR (homologous recombination)
122779791
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
Extensin_1
DUF223
zf-like
Motif
Other DBs
NCBI-GeneID:
122779791
NCBI-ProteinID:
XP_043898336
LinkDB
All DBs
Position
LG13:complement(17198448..17227892)
Genome browser
AA seq
660 aa
AA seq
DB search
MSMTLTHGAVEALVKGLPVYNPVLQLLNMRKLNSPSGTSRYRLMMSDGQRSFTSFLLDTQ
LNHLAEENLLVPNCVCKLTKTILETLKDGRRVLVVTGIEILQKAEETGGKIGNPTPYKAD
DETSQSMDSGTSVSEVSSSAAVPGPSDTNNSTPSPRGYGSGFGATASPMKTSPMMTSPMR
ASPMKASPMKASPMKTSPMKVSPMKASPMQASPMKTSPMKTSPMKTGSVISIAKLNPYQT
NWTIKARVTNKSNVRSWSNSKGEGKLFSFEIVDESGEIRLTAFNKEVDRFFTLLEQGKVY
YISKATVKIANKQFNRLKNDYEITLHAHSSIVLCDDSQGVPTLHFDFVPIAELENKEKDT
ILDIIGVCKSAEDVSKITTKTSREVSKRAISLIDTTETVVTVTLWGEEAEKFNCTREPVV
AIKGARLSDFGGRSLSTLFSSTVMVNPDIPEAFRLRAWYDQEGYAVESQSLTYTGSASSA
SRINWKTLSDVKNEQMGQDEKAEYFSCVATVVYTRKENCLYQACPSADCNKKVIEQPDGM
YRCDKCNRQFPNFKYRLILSANLADFGDNQWVTCFQETAEVLLGHSADTLGHLRDTDETA
FEEVFQKANFTTHIFKNRVKLETYNDESRVKVTVMEIQPLDHREYSRTLLRNIHKLASST
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgagtatgacactcacacacggggcggttgaagccctggtgaaaggcttaccagtatac
aatcccgtgctgcagctgctgaatatgcgtaaactcaacagtccgtcaggcacatccagg
taccgtcttatgatgagcgacggtcaacgctcttttacttccttcttgctggacacccaa
ttaaaccatctggcagaagagaacctcctggtaccaaactgtgtttgtaaactgacaaag
accatacttgagacattgaaagatggcaggcgagtgttggtggtgacaggtatcgagatt
ctgcagaaggctgaggaaactggtgggaagattggaaatcccactccatataaagcagat
gatgagacatcacagagtatggactcgggcacttctgtctctgaagtctcttcatcagcg
gccgtacctggaccctctgatacaaacaacagcaccccctctcctcgaggctatgggagt
ggatttggagcgacagcttcgcccatgaagacttcgcccatgatgacttcgcctatgaga
gcttcgcccatgaaggcgtcaccgatgaaggcgtcgcccatgaagacttcgcccatgaag
gtgtcacccatgaaggcgtcacccatgcaggcgtcgcccatgaagacgtcacccatgaag
acgtcacccatgaagactggttctgtgatttctattgctaaactcaacccttaccaaacc
aactggactatcaaagcacgagtcaccaataagtccaatgtccgctcctggagcaactcc
aaaggggagggcaagctcttctcctttgagatagtggatgagagtggagaaatcaggctc
acagccttcaacaaggaagtggacaggtttttcactttactggagcaaggaaaggtgtac
tacatctccaaagctacggtgaagatcgccaacaaacagttcaacagactgaagaatgac
tatgagattaccctccatgctcattcctccattgtgttgtgtgatgacagtcaaggtgtc
cccacactgcactttgactttgtgcccattgcggagctggaaaacaaagagaaagacacc
atccttgatattatcggtgtgtgtaagagtgcagaggatgtatccaaaatcaccactaag
accagcagagaagtttccaagagggccatcagcctgatagacacaactgaaacagtggtg
acagtcacactgtggggagaggaggcagagaagtttaattgcacaagggagcctgtggtt
gccattaaaggagctcgcttgtcagattttggaggcagatctctctctactttgttcagc
tcaacagtcatggtcaacccagacataccagaggctttcagattgagggcctggtacgac
caggaaggctatgctgttgagagccagtccctgacatacacagggtcagcgagcagcgca
tcgaggataaactggaaaacactgagtgatgtaaagaatgaacagatgggacaagacgag
aaggcggagtatttcagctgtgtggcaacagttgtgtacactcgcaaggagaattgtctg
taccaggcttgtccgtctgcagactgcaacaagaaggttatagaacaacctgacgggatg
taccgctgcgacaagtgtaacagacagtttccaaactttaaatacagactcatactttct
gccaacttggcagacttcggggataaccagtgggtgacgtgcttccaggagacggctgag
gtcctgttgggtcacagtgcggacacactgggacacttaagagacacggatgagaccgca
tttgaggaagtcttccagaaagccaacttcacaacccacatttttaaaaacagagtcaag
cttgaaacatacaacgacgagagtcgagtgaaggtaaccgtgatggaaatccaaccgctt
gaccacagggaatacagcaggactctcctccgcaacatccacaaattggccagctcaact
tag
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