Solea senegalensis (Senegalese sole): 122779893
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Entry
122779893 CDS
T07721
Symbol
scaf4a
Name
(RefSeq) SR-related and CTD-associated factor 4
KO
K13167
SR-related and CTD-associated factor 4
Organism
ssen
Solea senegalensis (Senegalese sole)
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssen03021
]
122779893 (scaf4a)
03041 Spliceosome [BR:
ssen03041
]
122779893 (scaf4a)
Transcription machinery [BR:
ssen03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122779893 (scaf4a)
Spliceosome [BR:
ssen03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
122779893 (scaf4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
122779893
NCBI-ProteinID:
XP_043898494
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All DBs
Position
LG13:3658980..3670022
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AA seq
1137 aa
AA seq
DB search
MEAVNAFNQELFSLMESKPPISRAKMISITKSAIKAMKLYKHVVQIVEKFIKKCKPEYKV
AGLYVVDSIVRQSRHQFGADKDVFGPRFTKNIAGTFENLCLCPVEDRSKIVRVLNLWQKN
GVFTIEIIQPLLDMAAGSGSAAAPYTCTDEPGSSPPPAKEPVTAVTANSTITPTAQLQNS
DAFAAVAQLFQSSQGQQLQQMLQNFQQQPVKPDIPTQPPLHMSHIQTQNINPVLGISTSQ
PPLPTQPTQQKSAFDTKLLDRFDYDDEPEVGEETKKDDTATQPSFIQQPPGFPQQHMEHF
KPQMMNMSQDLLQQVPLPPNGQLQAYGLPPGQNFPGIMPPMGHVHPGQPLPGSTGPPGFP
GVFPPHNAAQQQQDLSMDTDLSSMRDGRHGQRSRSGSRSPKRRRSRSNSRTRRSRHRRSR
SRSRERRHHSPRSRSQDRREREKEREKERERRQKGLPPSKSETLSICSTTLWVGQLDKRT
QQQDVACLLEEFGQIESINMIPPRGCAYIVMIHRQDAYRALQKLGRGSYKVNQKSIKIAW
ALNKGIKPEFKQFWDVELGVTYIPWSKVRDDQLEELKEGGTLDVETLSPEWSGMRKILDL
PEELNHNGRSEPQEETQILPVSTAAAPPAQVPPMQQPMIGVGSLQPPVFPGPMGMLPPSF
PPGVPPPPFIRPGFNPMQMPPGFLPPGAMPLGPPPAAKGGVEDQPLDPASLGNRKNDEGS
EGPNIFNNQMAPMGNQLGAPPGGLSGIPPGGPPGSIQPPTGGLLGARPGIIPLQRPPVPP
LPHMQRFPPPHVTRPPHPNMPPMPPQMLPRGPHPQPLAPKGGFGMLPPLNIRASFPPHGH
GPLPQVSLPQVSVPQVSVPQVPLPQGPPPFIRPGGPRGLEGPEETEGRPFRGERPGFRDR
EPDRERDWDRDRDRERDRGFGGGRRAFGDGPRGAGGDRMEGRDRLGGWQEDGGNHRGGWE
RDRDRDRDRDRDRDRDRDRDRRDWREKRSSLDRDRERGRGDNGERDHGRGEGGERGRGDR
GSRERERGRGAEGKEGDRPRRSERRERISRWDRDDRLAELENMEFRTSNSTEKPCVTPAP
TVEASQKPSEEASQQKPDSELLAPPPEATAAAKEPVPTEPLPSVQSETTDIKQESAS
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaacgcctttaaccaggagttattctccctgatggaatccaagcccccg
atctctcgggcgaagatgatatccatcaccaaatcagccatcaaagctatgaaactctac
aaacatgtggtccagattgtggaaaagttcattaagaagtgcaagcctgagtacaaggta
gcaggtctgtatgtggtggactccattgttaggcagtccagacaccagtttggagcagac
aaggacgtgtttggcccaagatttaccaaaaacatcgcaggaacttttgagaacctctgc
ctttgccctgtagaggaccggagtaagattgtgcgagtgttgaacctgtggcagaagaat
ggggtgttcacgatcgagattattcagcctctcttggacatggcagctggttctggcagt
gctgcagctccgtacacatgcacagacgagccaggttcttctccacctccagccaaagag
ccagttactgcagtaacggcaaactccaccataacacccactgctcagctgcagaactct
gatgcctttgctgctgtggcacaactcttccagtcgtcacagggtcagcagcttcaacag
atgctgcagaactttcagcagcagcctgtgaagcccgacatccccactcagcctcctctt
catatgagccacatacagactcaaaacatcaaccctgtcctaggcatcagcacttcacag
cctcccctgcccactcagcccacgcagcagaaatctgcctttgacacgaaattgctggac
cgttttgactatgatgatgagccagaagttggggaggaaacaaagaaggatgacactgca
actcagccctcctttattcagcagcctccaggcttcccacaacagcacatggagcacttt
aaaccacagatgatgaacatgtcacaagatctcttgcaacaggttccactccctcctaat
ggccagctccaggcctatggtttaccaccaggacaaaacttcccaggtatcatgcctcct
atggggcatgttcatcctgggcagcccctccctggttccactgggcctccaggtttccca
ggagtatttcctccacataatgctgcccagcaacaacaggacttgtcgatggatacagac
ctttcatctatgagggatggcagacacggtcaaaggtcgcgctccggctctcggtctcca
aagcggaggaggtcacggtctaattcccgcacacggcggtcgaggcacaggcgttcccgc
tcacgctccagagagcggcgtcaccactccccacgctctcgctcgcaggaccgtagggag
agagagaaggagagagagaaggagcgagagcgacggcagaaaggcctcccaccatccaag
agcgagacgctaagcatttgcagtacgactctctgggtgggccagctcgacaagagaaca
caacagcaagatgttgcatgtttactagaggagttcgggcagatagaatccatcaatatg
atccctccacgcggatgtgcctatatagttatgatacataggcaagatgcctacagggcc
cttcagaagcttggcagaggatcttacaaagttaatcaaaaatccatcaagattgcttgg
gctttgaacaagggcataaagcctgagtttaaacagttctgggacgtggagctgggtgtc
acttacataccttggtctaaagtcagggatgatcagttggaggagctaaaagaaggagga
acactggatgtcgagacattatcaccagaatggagtgggatgaggaagattttagatctt
ccagaggaactgaaccacaatggccgttcagagccacaggaggagacacagatattacct
gtgtctactgctgctgctcctcctgcacaggttccaccaatgcagcagccaatgatcggt
gtgggttccctccagcctcctgtctttcctggacccatgggcatgctccctccttccttc
cccccaggtgtcccccctcctcctttcatcagacctggcttcaaccccatgcagatgcct
ccaggtttccttccccctggtgcgatgcctttaggtcccccacctgctgccaaaggtgga
gttgaggaccaacctctggacccagcaagtctgggtaacaggaaaaacgatgaaggctca
gagggtcccaacatcttcaacaatcagatggcacctatgggcaaccaactaggtgcacca
ccaggtggtctttcaggtatacctccaggtggtcctccaggaagcatccaacctcccact
ggtggcctgcttggtgcacggcctggtataatcccactgcagcgtcctcctgttcctcca
ctaccacacatgcaacgtttccctccaccccatgtgacacgacctcctcaccccaacatg
ccccctatgcccccacagatgttaccaagggggccccaccctcagccccttgcacccaaa
ggaggttttgggatgctacctcccctcaacatacgtgcttctttccccccacatgggcac
gggccacttcctcaggtttctcttcctcaagtttctgttcctcaagtttctgttcctcaa
gttcctcttcctcaaggtcctcctccttttatcagaccaggaggacctcgtggcttggaa
ggaccagaagaaacagagggtagaccttttaggggagaaagacctggattcagggaccga
gagccagacagggagagagactgggatcgggacagggacagagagagagaccggggtttt
ggaggtggaaggcgagcatttggtgatggaccgagaggtgcgggtggtgatagaatggag
gggagggacaggcttggaggctggcaggaagacggaggcaatcaccgaggaggatgggag
agagatcgggacagggatcgggatcgggacagagaccgcgatcgggaccgagacagagac
agacgagactggagggagaagcgaagcagtcttgacagggacagggaacgaggaaggggt
gataacggggaaagggatcatgggaggggggaaggaggagaaagaggaaggggagacaga
gggagtcgagagcgagaaagagggagaggagctgaggggaaagaaggggacaggcccagg
cgatcagagcggcgagagaggatctcgcgatgggacagggacgatcgactagccgaactg
gaaaacatggaatttcggacctctaacagcacagagaaaccctgtgtgactcctgcgcct
actgtggaagctagtcaaaaacccagtgaggaagcttctcaacaaaagccagactcagaa
ctcctagctccgccccccgaggcaactgctgctgcaaaagagccggtgccgactgagcct
ttaccttcagttcagagtgaaactacagacataaaacaggaatcagcatcatag
DBGET
integrated database retrieval system
