Solea senegalensis (Senegalese sole): 122780068
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Entry
122780068 CDS
T07721
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122780068 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssen03021
]
122780068 (pcf11)
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122780068 (pcf11)
Transcription machinery [BR:
ssen03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122780068 (pcf11)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122780068 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
122780068
NCBI-ProteinID:
XP_043898776
LinkDB
All DBs
Position
LG13:complement(18552682..18566618)
Genome browser
AA seq
1591 aa
AA seq
DB search
MDCLLLRGCYVTDKAAVNLPCSFGSKMDDSAAREDARREYQSSLEDLTFNSKPHINMLTI
LAEENLTFAKDIVAIIEAQISKAPSIEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFIC
VFEKVDESTRKSLFKLRSTWDEVFPLKKLYALDVRVNAQDPAWPIKPLPPTVNASIHVNP
KFLKQSEEAPSPQPAPSKSPAVVKVAAVAPAAAVAAPAAAPAPQPVPAVSQSSVTQEQLI
RQQLLAKQKQLLELQQKKIELELEQTKAQLAGGFVLPTLAPVSATPTMIPKPVGQTAPVV
RPWIPPQTEADTKPSTRDPRLNRTGTPTASLAKEQPAVKKDGQLITGSAALTPEKSARPD
KARVPRKEAAEDKPKSKSPSPMAKSVQLKNKQAEAEKSQDGTKKDPRLKKRPDKSGDAKD
DESKVKKRCVDKKDREEVGPGAEPQRTSKGKSVNGLVTKRDREESSEKAEFKSGGNARTH
SRKRTRSRSRSRSPPVSPKRKDRRSPKSRARSSSLSPSPSHKPGKPRRVRADELPHGKPG
RDNRLPPKKSQSESSRRSKRPLEDRHAESRDSHSPRSHDGGSKETKEALHRWRSAWEEKR
VKLSDDTHVKPGPQRHKPYSTPTRPTTPRTPKHRLSVDADMQIPEVLSSASKKDLLRRAS
QRLESGEISREDFLNMAHQIKHFFQYQEEKLQRSDSWDDSCDFSPKKQQQPPLLPSPPSA
QPCPQDGLNAAELSYYEHKSKLRKTQVTHRMAGQEWEGDESVQDGEVAAQGEKMGGGRGT
ENAPSHKYSRTPRDRPDERRSKEREDPHPPQGPMIEEYNHGKEFPTLKSLPNLRFRRRAD
PREPSEREWNSPLTERQRYDEREEQKSGYDAPRRYPVDSRHPDPRRPEGPLPSGTVVHRN
CPSPGAPDAPAPRFERERLSPLHQKDSVEMSPVPRFESPNSEHSDDVPLSLDVALPPPKS
ILKAPARVGPPSAVRQHTNSPAHTPPHEGGHPPSRFDGLDPMGPPRPHPPGWYDDSAQFD
GPPHQGPARFDGGRPPHLNIPERFDGPIRGGDSMGRFEGHPQGPGRFDGPMGQQPQVRFV
GPGPGPGHFEGPMQHFEPRRFENNMAPGPIGFQQQRPMRFEGPPNQLGPMRFEGQNRFDV
PGQSGPRYDIPNVSHQNHPHFEGPPRFSSQHNMQPPMRQMAPSVYENPQVPQQNFNMAPQ
RFPESMSLAFPAGPIVFPAQPNLQRGNYNMQPVPPFSQPGPASFFSTAASTVGVQQPVNM
MSNVNQPFLPQSAVPFTPQPLPPENHFGQVDVNDLLTKLISTGIIKPSQPDVVPAVPAES
SAVVTPAAAPVEEEEEEEQEVEEEEDDVPDLTSFTVDDLKQRHETVVTKLYSGNQCCLCS
MRFTAAQTDMYADHLDWHFRQNHAGKVASKKVTHRRWYYSLRDWIEFEEIADLEERAKSH
FFEKVNEEEVQKNQAAAKEKEFQSVRATKDQVGESCEICQEPFETYWVEEEEDWFLKDAV
RVDDKNFHPACFEDYKNTTYVDATPSPNKLLTDHPLGSFVKTEEDVEETSCAVAAAVSVK
QEVVPEAAELPDMKKEVEDFTEEVKPEESKS
NT seq
4776 nt
NT seq
+upstream
nt +downstream
nt
atggactgtctgctgctccgtggttgttatgttaccgacaaggccgctgtgaacctcccc
tgctctttcggctcaaagatggacgacagcgcggcgagggaagacgcccgccgggagtac
cagtcctcgctggaggacctgacgttcaacagcaaaccgcacatcaacatgctgaccatc
ctcgccgaggagaacctcaccttcgccaaggatatcgtcgcaattattgaagcacaaata
agcaaggccccatccatcgagaagcttccggttttgtacttagtggattccatagtgaag
aatgttggaggagagtaccttgctgtgtttgctaaaaacctaatcacttcatttatatgt
gtctttgaaaaggtggacgaaagcactcggaagagtctgttcaagctgcgctcaacgtgg
gacgaagtgttcccgctaaagaagctgtacgcgctagacgtgcgtgtcaacgcgcaggac
cccgcctggcccatcaagccgctgccacccacagtcaacgccagcattcacgtcaacccc
aagttcttaaagcagtctgaggaggcgccctctccacagccggctccctccaagtcccca
gcggtggtgaaagtggcagcggtggcgccggcggcagccgtggcagcaccggcagcagcg
ccggctcctcagccggttcctgccgtgagtcagtccagcgtgacccaggagcagctgatc
cgacagcagcttctggccaaacagaaacagctcctggagcttcagcagaagaagatcgag
ctggagctggagcagaccaaagctcagctggctggtggctttgtgttaccaacgctcgct
cccgtctcggccacacccacgatgataccaaaacctgtcggccagactgcccccgttgtg
cgaccctggatccctcctcagaccgaggcggacacaaaaccgtccaccagagatccgcgc
ctgaaccgcaccggcacccccactgcctccctggctaaagagcagcccgctgtgaaaaag
gacggacagctaataacagggagtgctgctctgacgcccgagaaatccgcccggccagac
aaagccagggtccccaggaaggaggcagcggaggacaaacccaagtccaagtctccgtct
ccgatggccaaaagtgtccaactgaaaaacaaacaggctgaggctgagaagtcacaggac
ggcaccaagaaagaccccaggctcaagaagcgaccagacaaatccggagacgccaaagac
gatgagtcaaaggtgaagaagaggtgtgttgacaagaaggacagagaggaggtggggcca
ggagcggagcctcagaggacaagcaaagggaagtcggtgaacggcttggtgacaaagcgg
gaccgggaggaatcctccgagaaggcagagtttaagagcggaggcaacgctcggacacat
tcgaggaagcgcacccgctcgcggtccaggtcgcgctcgccacccgtctcgcctaagagg
aaggacaggcgctcgcctaagagcagggccaggagcagctcgctgtccccgtcgccgtct
cacaaacctgggaagccacggagggtccgcgccgacgagctgccgcacggcaagccgggc
agagacaaccggctcccgcccaagaagagccaatcggagagcagcaggaggtcgaagcga
ccgcttgaggaccgccacgccgagtccagagactctcactcgccgcggagccacgacggt
ggcagcaaggagacgaaggaggcgctgcaccgctggaggagcgcctgggaggagaaacga
gtgaagttgtcagacgacacgcacgtgaaacccggacctcagagacacaaaccgtacagc
accccgacgcggcccaccacaccccgaaccccgaagcaccgcctcagcgtggacgcggac
atgcagattcctgaggtcctcagctccgcctccaagaaggaccttctaaggagggccagt
cagcgtttggagagtggcgagatttcccgggaggacttcctaaacatggcgcaccagatc
aaacacttcttccagtatcaggaggaaaagttgcagcgctcggacagctgggacgactcc
tgcgacttttcacccaagaagcagcagcagccaccgctgctgccgtcaccgccctctgct
cagccctgcccccaggatggattgaacgcagcggagctgtcgtactacgagcacaagtcc
aagctgaggaagacgcaggtcactcaccggatggccggtcaggagtgggagggcgatgag
agtgtacaggacggtgaggtggcggctcagggcgagaagatgggcggtggacgcggcact
gaaaacgcaccgtcccataaatacagccggacgccacgagacagaccagatgaacgacgg
agtaaagagcgggaagatccacatcctccgcaaggccccatgatcgaggagtacaaccac
ggcaaagagttccccacgctgaaatctctgccgaaccttcgcttcaggagaagagctgac
cccagagagcccagtgagagagagtggaactcgccactgaccgagcgccagcgctacgac
gaacgcgaggaacagaagagtgggtacgatgctccacgcaggtacccggttgactccagg
caccctgaccctcggagaccagagggacccctgccatctggcactgtggtccacaggaac
tgcccgagcccaggtgctccagacgcccctgccccgaggtttgagcgtgaacgcctctca
cctcttcaccaaaaagactcggttgagatgagcccggtcccacgctttgagagccccaac
agcgagcacagtgatgacgtgcctctcagtcttgacgttgccctccctccaccaaaatcc
atcctcaaggcgccagcccgcgtaggcccgccgtctgctgtccgacagcacacaaactca
ccagcacacacgccacctcacgaaggaggtcaccctccctcgaggtttgatgggctcgat
cccatgggccctcccagacctcaccctcccggctggtatgatgactcggcgcagtttgat
gggcctccccaccaggggcccgccaggtttgatggtggcagaccgcctcatctcaacata
ccagagaggtttgatggtccaataagaggcggagactcgatgggcagatttgaaggtcac
ccacagggtcctgggaggtttgatggccccatgggccaacagccccaggtgcggtttgtg
ggcccgggaccagggcctggtcactttgagggccccatgcaacactttgaaccacggcgt
tttgaaaacaacatggctcctggaccaattggcttccagcagcagcggcccatgcgcttc
gagggccctccaaaccaactgggccccatgaggtttgaaggtcagaatcgctttgatgtt
ccgggacagtcgggaccccgttacgacatacccaatgtatcccatcagaaccacccacac
tttgaggggccacccaggttctcctcccaacacaacatgcagcctcccatgcggcagatg
gcgccgtctgtttacgaaaacccccaggtgccgcagcagaacttcaacatggccccacaa
cggttcccagagtccatgagccttgctttccccgcggggcccatagtgttcccagcacag
ccaaacctgcaaagagggaactacaacatgcagccggtgccgccattcagccagccaggc
cccgcctccttcttcagcacagctgcctccactgtcggcgtacagcagccggtgaacatg
atgtccaacgtgaaccagcctttcctgcctcagagcgccgtgcctttcacaccacagccg
ctgcctccggagaaccactttggtcaggttgacgttaacgacctgctcaccaaactcatc
tccaccggaatcatcaaaccctcgcagcctgatgtggtgccggccgtgccggccgagtcg
tctgccgtcgtgactccggcagctgcgccggtggaagaggaggaagaggaggagcaggag
gtggaggaggaggaagacgacgtcccggacctcaccagctttactgtggacgacctaaaa
cagcgccacgagactgttgtgacgaagctgtactcagggaaccagtgctgcctgtgcagc
atgaggttcaccgccgcgcagaccgacatgtacgccgaccacctggactggcactttaga
cagaaccacgcgggcaaggtggcgagcaagaaggtcacacaccggcgctggtactacagc
ctgagggactggatcgagttcgaggagatcgcagacctggaggagcgagccaagagtcac
ttctttgagaaggtgaacgaggaggaggtccagaagaaccaggcggccgccaaggagaag
gagttccagagtgtcagagccaccaaggaccaagtgggagagtcgtgtgaaatctgtcaa
gagccgtttgagacgtactgggtggaagaagaggaggactggtttctgaaggacgctgtg
agagtggacgacaagaacttccatcccgcctgttttgaagattataaaaatacgacatat
gtcgatgcgacgccgtcgcccaacaagctgctcaccgatcatccgctcggctccttcgtg
aagaccgaggaagacgtggaggaaacttcctgcgctgttgctgccgccgtctcagtcaaa
caggaagtggtgcccgaggccgccgagctccctgatatgaagaaagaggtggaggatttc
acagaagaagtaaaaccggaggagagtaaatcgtga
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