Solea senegalensis (Senegalese sole): 122780120
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Entry
122780120 CDS
T07721
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ssen
Solea senegalensis (Senegalese sole)
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssen03000
]
122780120 (rc3h1b)
04121 Ubiquitin system [BR:
ssen04121
]
122780120 (rc3h1b)
Transcription factors [BR:
ssen03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
122780120 (rc3h1b)
Ubiquitin system [BR:
ssen04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122780120 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
NYN_YacP
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
122780120
NCBI-ProteinID:
XP_043898864
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All DBs
Position
LG1:11945871..11960446
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AA seq
1135 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAINTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDSQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGQGGLMPDDGLPLDVAVTRKPS
PLPNGSVAPSLPQLIARGTDTVPYELLRKPVKMDGVNSSTPGSPPDVLDSVPKSGMPLPP
HSLGHSRMPTDHLSGVKHMPVVPRSSPVYSQQQLPEMCYDPRPPPSASQYEPPQYPTGYP
YQPPPQYVSRDYMRNPPPPSDSGPPYQDPYSGYGPPERSYQAPHSGPSFSYPHPPHYDRG
RHGTYSGPPPPPQPYPSQRDNLVRMSPAPLDVPPPSGGQANSLYHQEPSARDRYPPDSYY
PPGAQAPPMRAYVSRGPSYSGPQPSLDYLHRRRQELLSQLEERKVISPPPFAASPTLSHS
FPSDYPEYGDENSKTILKGREPDYTGQYSPWSCETIGSYIGTKDAKPKDVMVSGTMEIMN
VEAKSLREPSLEAPRRSAEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTAGPVQAMVT
TSQNPNSKHMAMPAAEYTYGSHGGWGGAPYPSHQTATSSQGHFSERLPLADREQLKIELQ
QVNQQINQQTQMHSMEAASNSLMLQREANALAGQPVQPCQAQAAVVAQQQQPKWPTGGAG
ATPVSSEQLSLELHQVEREIGKRTREMAMENQVAHDVQQYKMKPTENGQPDHKSQLEEIS
LALGEVSNGSSSLQESAVGGSMLSLTNKTSALSLCSDPGATGSEMQKNGVVHSCS
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagcaccacaatggacagagttcctgctgtgtccaatctgcacacagaca
tttgaagagactgttcgcaggcccatcagtttaggttgtggacatactgtctgcaagatg
tgcctgaacaagttgcaccgcaaggcctgtccctttgaccagacagccatcaacacagac
attgagcagctacctgtcaacacagccctgttgcagctggtgggaggccaggttcctaag
gctcaaccagttgccttgattaccagtccagaagactcacagcattatgaggaggccagg
cagtgtgtggaggagctggccctctacctcaaacccctcagcaacacccgaggtgtgggt
ctgagcagcacagcccagagcatgctgagtcgccccatgcagaggaaactggttacctta
gtccactgccagctggtggaggaggagggccgagttagagccatgagagctgcccgctct
cttggtgagcgaactgttaccgagctcatcttgcagcaccagaatccacagcaactttcc
tccaatctgtgggctgctgttcgtgcacggggatgtcagtttcttggcccagcaatgcaa
gaggaagctctaaagttggttctccttgctctggaggatggttctgctctgtctaggaag
gtgttggttctctttgtagtccagaggcttgagccacgtttcccacaggcctctaaaact
agtataggtcatgtggtgcagctgctttacagagcttcctgcttcaaggtaaccaagcgc
gatgaagattcatccctgatgcagctgaaagaggagtttcgcacttatgaggctctacgg
cgtgagcacgactctcagattgttcagatcgccatggagggagggctgcgcattgcacct
gaccagtggtcttctctgttgtatggagatcagtctcacaagtcacacatgcagtctatt
atagataagctgcagaccccagcatctttcgctcagagtgtccaggagctgacgattgca
ctgcagaggaccggcgacccagctaacctcaacagactgcgaccacacctggaactactg
gccaacattgatcccagtcctgatgccccccctcctacatgggagcagcttgagaagggc
ttggttgcagtgaagacagtggtgcacggcttggtggacttcatccagaaccacagcaag
aaaggagctgatcctcaacagcctcctcagcacagcaagtacaagacatacatgtgtcgc
gacatgaagcagaaaggaggctgtcctcgtggagccagctgcacctttgctcactctcag
gaagaactggagaagtatcgtaaaatgaacaagcgtctggcagctcgcctccccggccaa
ggaggtctcatgccagatgatggccttcctcttgatgtggctgtgacccggaagccttca
cccctccccaatggcagtgttgcgccctctttgccccaactcattgctcgtggcactgac
acggttccatatgagctgttgcgtaaacctgttaagatggatggagtgaattccagtacc
cccggatcaccacctgatgttctggactctgtgccgaaatctggtatgccactgccacct
cattctctgggccacagcaggatgccaactgaccacctgtctggtgtgaagcacatgcct
gtggtacctagaagttctcctgtgtactcacagcaacagctccctgagatgtgctatgac
cctcgcccaccaccttctgcttctcagtatgagccaccgcaataccccacaggttatccc
taccaaccaccaccacagtatgtttcacgggattacatgcgtaatcctcctcccccaagt
gattcaggacccccctaccaagatccctactctggttatggccccccagagcgctcatac
caggcccctcactctggcccatccttctcttacccccatcctcctcactacgaccggggg
cgccatgggacctacagcggtccaccgcctcctccacagccttacccatctcagagggac
aacctggtcagaatgagtcctgcaccattagatgttcctccaccatcaggtggtcaggca
aattcactgtaccaccaggagcccagtgctagagatagatacccaccagacagctactat
ccaccaggtgcccaggctccacccatgagggcttatgtcagcagggggccatcatatagt
ggtccacaacccagcctggactacctacaccgacgtcggcaggagcttttgtcccagctg
gaggaaaggaaggtcatctcccctccaccattcgctgcctctccaactctttcccattcc
ttccccagtgactaccctgagtatggtgatgaaaactccaaaaccattttgaaaggcaga
gagcccgattatacggggcagtactcaccctggtcttgtgagaccattggctcctacatt
ggcacgaaggatgccaaacccaaagatgttatggtttctggtaccatggaaataatgaac
gtggaggcaaagagtctgagggaaccgtcgctggaggctcctcggaggagtgcagaagtg
aaggatgatgaccccattatcccatttggcccgcagcccactgtatcacgtttcggtgcc
atctcccgcacctcaaagacaggctatcagaccgctggccctgtgcaggcaatggtcacc
acttctcagaacccaaactctaaacacatggccatgccagcagcagaatatacgtatgga
agccatggaggatggggtggagctccatacccctcccaccagactgccacctcctctcag
ggacacttcagtgagcgcctccccctggcagacagagaacagttgaaaattgagctgcag
caggtcaaccagcagatcaaccaacagacccagatgcacagcatggaggctgccagtaat
tctttaatgctgcagagggaggccaatgcattggcagggcagcctgtgcagccctgccag
gcccaggctgcagtagtagctcagcagcaacaacccaagtggccaacagggggagcaggt
gctactcccgtctccagtgaacagctaagccttgagctccaccaggtggagagagagatt
ggaaaaaggacccgtgaaatggctatggaaaaccaagtagcacatgatgttcagcagtac
aagatgaaacctacagagaatggacaaccggaccacaagagtcagctggaagaaatctcc
ctggctcttggcgaggtgtcaaatggctccagcagtctgcaagaaagtgcagtaggcggg
tccatgctgtcactgaccaataagacgtctgcattgagtctgtgctctgatccaggtgcc
actggttcggagatgcagaagaatggcgttgtccattcctgctcttag
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