Solea senegalensis (Senegalese sole): 122780311
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Entry
122780311 CDS
T07721
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha isoform X1
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen04010
MAPK signaling pathway
ssen04020
Calcium signaling pathway
ssen04144
Endocytosis
ssen04510
Focal adhesion
ssen04540
Gap junction
ssen04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
122780311 (pdgfra)
04020 Calcium signaling pathway
122780311 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
122780311 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
122780311 (pdgfra)
04540 Gap junction
122780311 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
122780311 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ssen01001
]
122780311 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ssen04090
]
122780311 (pdgfra)
Enzymes [BR:
ssen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
122780311 (pdgfra)
Protein kinases [BR:
ssen01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
122780311 (pdgfra)
CD molecules [BR:
ssen04090
]
Proteins
122780311 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_3
Pkinase
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
V-set
VEGFR-1-like_Ig-like
Motif
Other DBs
NCBI-GeneID:
122780311
NCBI-ProteinID:
XP_043899103
LinkDB
All DBs
Position
LG14:complement(6294912..6311812)
Genome browser
AA seq
1470 aa
AA seq
DB search
MDGVKMYVIFGGVLVLLVTATSGLSPPKIESEEDEFILQPNSTFNISCTGKRNVVWAEPL
PENTFVYPGYYTATLFIYNVTVENTGYYMCVYENLDGELETESEEDTEAGIYVFAPDPLV
PFVPESTSNLVVPVGSAGVHISCLVSDPHSDVILRSLLTGEEMPAFYDNKIGFFGNLSPG
LYQCETTVNGRTVGSAVYTVNDETPEEMDDFNVEVKASEETVRAGQPFNITCMAPTGLGF
QQQWLHPKKQAVDAVQMKQTFPDRVIYTLSVPHATSQDSGTYECSITHEISGKVRVSSVT
VAVFDENSFVALDHSGILAMELVSLLEETEFTILISAYPPPKVMWLKDGKDLSANYYTLT
KTSHVEGNRYQSILILRQPLEKDSGNYTITAQSGTRTAHFSFNLKVKAPTSILFPPSSAP
VLLPPTDEMVVTLHTPFTLTCRGEAPLVWETPLEVFEQTQEDNSGLFVSTITVDSATAMH
TGYYSCFYSKNATGELEDSSIYIYVPDPDVAFVPWLGAFSNHVLSDHEEMEIQCRVSDPS
ANVTLINVDTQQPVPSVYDSKRGALGIFTAGTYICKALINGEEHYSGEYIVHGWTGELHV
ELTAKRTALLVGESITVTCVARGSEILEDHWKFPGKLANRGVKTVHENKRTQEILYTLTI
PQATTKDSGIYSCSITDIISNDSQTKEQAIKVFASEFTAVRPQFGEYESAELDEVREFRA
EITSFPTARVTWFKNGIPLSNVTAEISTSLRQLSETSYISVLTLIRAKEEDSGNYTMRVE
NGNQRQDVGLILEVKVPAVIVELMDIHHGSATGQSAVCVTRGQPTPVVEWFVCKNIKHCA
NDSSLWAPLATNSTKITVDSHLDEDNNLESQVMFGHLENTLAVRCLAKNEMAAVSREIKL
VSNGPHPELTVAAAVLVLLVIVIISLIVLVVIWKQKPRYEIRWRVIESVSPDGHEYIYVD
PMQLPYDSRWEFPRDRLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSS
EKQALMSELKIMTHLGPHLNIVNLLGACTKSGPINIITEYCFYGDLVNYLHKNRENFLSL
SPEKNKKELDIFGINPADESSRSSYVILSFESKADYMDMKQADNTQYVPMLEMSNASKYS
DIQTSSYDHPPSQKGSSEGELDNLLSDDMNEGLSTTDLLSFTYQVAKGMEFLASKNCVHR
DLAARNVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNLYTTLSD
VWSYGILLWEIFSLGGTPYPGMVVDSSFYNKIKSGFRMSKPEHAPLDVYEMMMKCWNSEP
EKRPSFLGLSDTVASLLPSSYKRHYERVNHEFLKSDHPAVTRVCLENDDAYIGITYKNPG
KMKDRESGFDEQRLSSDSGYIIPLPDLDPISDDEYGKRNRHSSQTSEESAIETGSSTSTF
AKREGETLEDITLLDEMCLDCSDLVEDSFL
NT seq
4413 nt
NT seq
+upstream
nt +downstream
nt
atggatggggtgaagatgtatgtcatctttggaggtgttctggtgctgttggttacagct
accagtggactctccccaccaaagattgagtcagaagaagacgagttcatccttcagccc
aactccacgttcaacataagctgcaccggtaaaagaaacgtggtttgggccgaacccctg
ccggaaaacacctttgtttatcctggatactacacagcaacgctcttcatttacaacgtc
acggttgaaaacaccggctattacatgtgtgtgtatgaaaacctggacggtgaactggag
actgagtcagaagaggacaccgaggcaggaatatatgtctttgcgccagatcccctggtt
ccatttgttcccgagtccacaagtaacttggttgtccctgtgggctcggctggagtccac
atctcctgccttgtgtccgaccctcactctgatgtcatcctgaggagcctcctcacggga
gaagagatgcccgcattctacgacaacaagataggcttttttgggaatctgtctcctgga
ctgtaccagtgtgaaactactgtgaacggccggacagttggaagtgcagtttatactgtg
aacgatgagacccctgaagagatggatgatttcaatgtggaagtaaaagccagtgaggaa
actgtgagagctgggcaacctttcaacatcacctgcatggctcctactgggctgggtttt
cagcagcagtggctccatcctaaaaaacaggctgtggacgcagttcagatgaaacagacc
tttcccgatcgggtcatctacaccctcagtgtcccacacgccacctctcaggacagcggc
acctacgagtgctcaatcactcatgaaatcagcggaaaagtcagagtcagcagcgtgacc
gtcgctgtgtttgacgagaattcctttgtggcactggaccacagtgggattctagccatg
gagcttgtcagccttttggaggagactgagttcactattctcatcagtgcttaccctccc
ccgaaagtgatgtggctgaaagacggcaaagacttatcagcaaactactacaccctcact
aaaaccagccacgttgaaggaaataggtatcaaagcattctgatattacggcagcctcta
gagaaagacagtgggaattacaccatcacagctcaaagtggcacccgcaccgctcacttc
tcatttaacctcaaagtgaaagcccccacctccatactattcccaccatcctcagccccg
gtgctgctgccaccgactgatgagatggtcgtgaccctccacactcctttcaccttgacc
tgcagaggagaggccccactggtgtgggagacgccgctcgaggtgttcgagcaaacacag
gaggacaacagtggtctgtttgtgtccaccatcactgtggatagtgcaactgcaatgcac
acaggctattactcatgcttctacagcaaaaatgccacaggcgagcttgaggacagcagc
atttacatctatgtgccagatccagatgttgcctttgtgccatggctgggggctttcagt
aaccatgtcctgtctgaccacgaggagatggagatccagtgtcgagtgtctgatcctagt
gctaatgtgaccttgattaacgttgacacccagcaacctgtgccaagtgtttatgacagc
aagaggggtgcattggggatattcacggctggaacttatatttgtaaggccctcataaac
ggagaagaacactacagtggggaatacattgtccacggctggacaggtgagttacatgtt
gagctgacagccaagcgcactgctctgctggtgggagagtccatcactgtcacctgtgta
gctcggggatcagaaattcttgaagatcactggaaattccctggcaaactggctaatcgt
ggtgtcaaaactgtgcatgaaaataagaggactcaagagatcctttacaccctgacaata
ccgcaagctacaaccaaagacagcggcatctactcatgctccatcactgatattattagt
aatgacagccagacaaaggaacaagcgattaaagtttttgcaagtgagtttacggccgtc
cggccacagtttggagaatatgaatcagcagaattggatgaagtcagagagttcagggca
gaaatcacttccttccccactgcccgtgtcacatggttcaaaaatggaatcccactcagc
aatgtgacagcggagatctccaccagcctccggcaactcagtgagaccagctacataagt
gtcctcacactaatccgtgccaaagaggaggacagtggaaactacactatgcgagtggag
aacggaaaccaaaggcaggacgttggcttaattctggaagtcaaagtgcctgcagtcatt
gtggaactaatggacatccaccatggctcagccacaggccagtctgcggtgtgtgttact
cggggtcagcccactcctgtggttgaatggttcgtctgcaagaacattaaacattgtgcc
aatgactcgtccttgtgggcccccctcgccaccaactccacaaagatcacagtggactcc
cacctcgatgaggataacaacctggagagccaggtcatgtttggtcatctggaaaacact
cttgcggtgcgctgcctggccaagaacgaaatggctgccgtcagcagggagatcaaactg
gtgtccaatggccctcacccagagctgactgtagctgctgctgtgctggtgctcctggtc
attgtcatcatctcactcattgtcttggttgttatctggaaacagaaaccacgatatgag
atccgctggcgcgtgatagagtctgtgagccctgatggccatgaatacatctatgtggat
cctatgcaacttccctacgactctagatgggagttcccccgtgacagacttgtgctaggt
cgtatcctgggctctggagcctttgggaaggtagtagagggcaccgcctatggactcagc
cgctcccagccggtcatgaaggtggcagtgaagatgttgaaacccacagcacgctccagc
gagaaacaagccctgatgtctgagctgaagatcatgactcatcttggacctcacctcaac
attgttaacctcctgggcgcatgcaccaagtcaggccctatcaacattatcacagagtac
tgcttctacggggacctggttaactacctgcacaaaaaccgggagaacttcctgagcctc
agcccagagaaaaataaaaaagagctggatatctttgggatcaaccctgcagacgagagc
agcaggagcagttacgtgatcctgtccttcgaaagcaaagcagactacatggatatgaag
caggctgacaacactcagtacgtgcccatgctcgagatgagcaatgcctccaaatactca
gacatccagacatccagctatgaccacccaccttcccagaaaggatcgagtgagggtgag
ctggacaacctgttgtcggacgatatgaacgagggcctcagcaccaccgatctgctcagc
tttacctaccaagtggccaaaggcatggagttcctggcttccaaaaattgtgtgcatcgg
gacctcgctgccaggaatgtcctcctctctcagggcaagatcgtgaagatctgtgacttt
ggactggccagagacattatgcatgacaacaactatgtctccaaaggaagcacttttctg
ccagtgaagtggatggccccagaaagtatttttgacaacctctacacgactctcagcgac
gtttggtcctacggcatcctcctctgggagatattctcactaggtggcaccccataccca
gggatggttgtggattccagcttttacaataaaatcaagagtggtttcaggatgtccaag
cccgaacatgcgcctcttgacgtttatgaaatgatgatgaagtgctggaacagtgagcca
gagaagaggccctctttcttgggtttgagtgatactgttgcgtccttgctgccctccagc
tacaagaggcattacgagagggtaaaccacgagttcctgaagagcgatcaccccgctgtg
actcgggtgtgcctggaaaatgacgacgcctacattggcatcacttacaagaacccgggc
aagatgaaggacagggagagcggcttcgatgagcagcggctgagctcagacagtggctac
attattcctctacctgacctcgaccctatatctgacgatgaatatggaaagaggaacaga
cacagctctcagacatctgaggagagcgccattgagacaggctccagcacctccactttt
gctaagcgagagggtgagaccttggaggacatcacgctgctggacgagatgtgtctggac
tgtagtgacctggtagaagacagctttctgtga
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