Solea senegalensis (Senegalese sole): 122780553
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Entry
122780553 CDS
T07721
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03030
DNA replication
ssen03410
Base excision repair
ssen03420
Nucleotide excision repair
ssen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122780553 (rfc4)
03410 Base excision repair
122780553 (rfc4)
03420 Nucleotide excision repair
122780553 (rfc4)
03430 Mismatch repair
122780553 (rfc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssen03032
]
122780553 (rfc4)
03036 Chromosome and associated proteins [BR:
ssen03036
]
122780553 (rfc4)
03400 DNA repair and recombination proteins [BR:
ssen03400
]
122780553 (rfc4)
DNA replication proteins [BR:
ssen03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
122780553 (rfc4)
DNA Replication Termination Factors
ELG1-RFC complex
122780553 (rfc4)
Chromosome and associated proteins [BR:
ssen03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
122780553 (rfc4)
DNA repair and recombination proteins [BR:
ssen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
122780553 (rfc4)
Check point factors
HRAD17(Rad24)-RFC complex
122780553 (rfc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
RCF1-5-like_lid
DNA_pol3_delta2
Rad17
AAA_assoc_2
AAA_16
AAA_22
AAA_11
AAA_30
AAA_24
DUF815
Mg_chelatase
Gp44_lid
AAA_19
AAA_28
RuvB_N
Cdc6_lid
SLFN-g3_helicase
ResIII
AAA_5
DNAX_ATPase_lid
AAA_7
Motif
Other DBs
NCBI-GeneID:
122780553
NCBI-ProteinID:
XP_043899527
LinkDB
All DBs
Position
LG14:complement(22381092..22385160)
Genome browser
AA seq
360 aa
AA seq
DB search
MQAFLKGATVQSVRPQKDKTTAGSSAEKKIKALPWVEKYRPKCVDEVAFQEEVVAVLKKS
LEGADLPNLLFYGPPGTGKTSTILAAARELYGPELFRHRVLELNASDERGIQVVREKVKN
FAQLTVAGSRSDGKPCPPFKIIILDEADSMTAPAQAALRRTMEKESRTTRFCLICNYISR
IIEPLTSRCSKFRFKPLANQIQEERLLAICDKEKLKFTKESVAALVKVSDGDLRKAITFL
QSAARLSADKQITEQTVIEIAGVVPPKMIDNLLQICFKGTFEKLEVTVRDMVDEGYAATQ
ILSQLHDAIIEQELSDRQKSAITEKMAVVGKCLTDGADENLQLLSLCSVIMQQSTQTHNN
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgtttttgaaaggagcgacagttcagtctgttcgaccacagaaagacaaaaca
acagcaggaagcagcgctgagaagaaaatcaaggctcttccctgggtggagaagtacaga
cccaagtgtgtggacgaggtggcgtttcaggaggaggtggtggccgtgctgaagaaatcg
ctggaaggagcagatcttcccaacttgctcttctatggtcctcctggaacagggaagacc
tcgaccatcttagctgctgccagagaactttacggtccagagttgttcagacacagagtc
ctggagctcaatgcctctgatgaacgagggattcaggtggtcagagagaaggtcaagaac
tttgctcaactcactgtggcaggaagtcgatcagatgggaaaccttgtcctccgtttaag
atcatcatcctggacgaggcggactccatgacggcgccggctcaggctgctctcagaaga
accatggagaaagaatcacgcaccacacgcttctgtctcatctgtaactacatcagcagg
atcattgaacctttgacctccagatgctccaagtttcgcttcaaacctttagccaatcag
atccaagaggagcgtctgctcgccatctgtgacaaagagaagctcaagttcaccaaagag
agtgtggcggcgttggtgaaagtatcagacggagatctgaggaaagccatcaccttctta
cagagcgctgctcgactcagtgctgacaaacagatcacagagcagactgtcatagaaatc
gccggggtcgtccctccaaagatgatcgacaacctgctgcagatttgcttcaaaggaacg
tttgagaaactggaggtgaccgtgagggacatggtggacgaaggctacgccgccacacag
atcctgagtcagctgcacgacgccatcatcgagcaggagctgagcgacagacagaagtcg
gccatcacagagaagatggcggttgttggaaagtgtttgacggacggagctgacgagaat
ctgcagctcctgagtctctgctcggtcatcatgcaacagtcgacacagacacacaacaac
tga
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