Solea senegalensis (Senegalese sole): 122781687
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Entry
122781687 CDS
T07721
Symbol
col9a1b
Name
(RefSeq) collagen, type IX, alpha 1b
KO
K08131
collagen type IX alpha
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen04510
Focal adhesion
ssen04512
ECM-receptor interaction
ssen04518
Integrin signaling
ssen04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122781687 (col9a1b)
04518 Integrin signaling
122781687 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122781687 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122781687 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ssen00535
]
122781687 (col9a1b)
Proteoglycans [BR:
ssen00535
]
Extracellular matrix (ECM) proteoglycans
Others
122781687 (col9a1b)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
122781687
NCBI-ProteinID:
XP_043901568
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All DBs
Position
LG15:complement(8111347..8124725)
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AA seq
679 aa
AA seq
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MDRALNIRGPLLVLLLQLVLICSSQRNEGPPGPPGPAGVPGIDGVSGERGADGEDGLPGP
DGDAGKPGSSGLPGIPGNDGLTGPVGDPGPDGPPGQKGEPGKAGPRGTAGVGPDGPPGPL
GHGGLLGEVGKVGPPGAIGVRGPQGPRGPTGPRGAAGMLGSADLCPNSCPPGTSGHPGLP
GMKGHKGVKGDAGEPGKQGHKGEEGEQGSPGEVGAQGPRGSQGNRGAMGMMGPKGEMGPR
GHDGEPGPQGVMGATGDQGQRGAMGEPGPTGEKGTQGSRGITGVPGPKGDAGLSGPDGRE
GIPGMPGAKGGIGQPGVPGEVGLQGFPGMPGTPGPKGLSGPKGDSGEPGFAGTIGPAGKT
GERGEQGEGGPVGPIGEPGDIGAQGPVGSSGKLGARGPKGAPGLPGLPGPPGHPGVKGER
GERGEAGPKGDQGAQGDEGNPGDKGDGGESGESGTKGEVGNLGETGKRGPEGSRGQPGIE
GPSGSPGPRGMQGNRGPPGVRGSQGPAGKEPSDQHIKQVCMRVMQEQLAQLAASLRRPES
GAAGLPGKPGPPGPPGVPGDNGFPGHSGTRGLPGLKGPPGPLGLKGPKGEIGDRGSRGPT
ARGPKGQPGPPGFPGEPGKSGYGQDGRDGQRGPPGTHGQPGAPGSPGAAGPNGYCDPSAC
NLQAGAAHQSLDVKGPAGN
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggatcgggccctgaacattagagggccactgctggtgctgctcctgcagcttgtcctt
atttgctcctctcaacggaatgaaggacctcctggccctcctggacctgcaggtgtccca
ggaattgacggcgtttctggggaaaggggagcagatggcgaggatggacttcccggacct
gatggtgatgcaggtaaacccggctcctcgggattacctggaatacctggaaatgacggt
ctgactggccctgttggagatcctgggcccgacggtccccccggacagaaaggtgaacct
gggaaagccggacctcgtgggacagctggtgttggaccagatggaccccccggaccactt
gggcatggaggacttctaggtgaagtgggaaaagttggaccacctggggccataggtgtg
agaggaccacagggacctcggggaccaacagggcccagaggtgcagctggaatgctcggc
agtgctgacctgtgtccaaactcttgtccacctggaacttctggacatccgggccttcct
ggcatgaagggtcacaaaggtgtaaagggtgacgcaggagaaccaggaaaacaaggacac
aagggtgaggaaggagaacagggaagtccaggagaggttggagcccaaggaccgaggggc
tctcagggaaatcgtggagccatggggatgatgggccccaagggtgagatgggacctcgg
ggtcatgatggagaaccaggtccccagggtgtcatgggagcaactggggatcaaggtcaa
agaggtgcgatgggtgagcctgggcctacaggtgaaaagggtactcaagggtcaagagga
atcacaggtgtgccaggtcccaaaggagatgctggtttatcgggtccagatggtcgagaa
ggtatacctgggatgccaggagcaaagggaggcatcggacagccgggcgttcctggagag
gtcggacttcaggggtttcctgggatgcctggtacacctggaccaaaaggcttgagtggc
cctaagggagattctggtgaaccaggctttgctggaacaataggacctgctggcaaaaca
ggtgaacgcggagaacagggagagggcggacctgttggacccattggtgaaccaggagat
ataggagcgcagggtcctgtaggttcatctggaaaactaggcgccaggggacccaaaggt
gcacctggacttcctggtctccctggtcctcccggtcatcctggggtgaaaggagagcgg
ggagaacgtggagaagcaggacccaaaggagaccagggagcacaaggtgatgagggaaac
cctggtgacaaaggcgatggtggtgaatcgggagaatctggaaccaaaggggaggttggc
aacctgggcgagactggaaaacgaggtcctgagggtagtcgagggcagcctggcatcgag
gggccttctggctcacctggaccccggggcatgcagggaaacagaggtccacctggagtc
agagggtcccaggggcctgcaggcaaagagccaagtgatcagcacatcaaacaagtttgc
atgcgagtcatgcaagaacagctggcccagttagcagctagcttaaggaggccagaatcc
ggtgcagctggtttacctggaaaacctggacctccagggcctcctggggttccaggagac
aatggcttccccgggcactctggaacgaggggtctcccgggactcaaagggccaccagga
cctctaggattgaaaggaccaaaaggcgaaataggagacagaggctccagagggcccact
gcacgaggacccaaaggtcaaccaggacctcctggatttccaggtgaaccaggcaaatcc
ggctatggtcaggatggtcgggacgggcagaggggaccccctggaactcatggacagccc
ggtgcacctggatctcctggtgcagctggtcctaatggttactgtgacccgtccgcctgc
aacctccaggcgggagctgctcaccagtctctggatgtgaaggggcctgcagggaactaa
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