Solea senegalensis (Senegalese sole): 122782082
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Entry
122782082 CDS
T07721
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(I) chain
KO
K07603
collagen type XVII alpha
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122782082 (col17a1b)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF2868
Motif
Other DBs
NCBI-GeneID:
122782082
NCBI-ProteinID:
XP_043902217
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Position
LG15:3102413..3117578
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AA seq
1275 aa
AA seq
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MYSLVSVTTSLGFSHPLGFPPVVRIHRDSGIFGGGGFCCCSDACCSWWKWLLGLLLLSLL
LLGLLFGLIALAEDVRKLKNRVATLEAESSVANAHTSRLSGSSTNIHLGGGGAGTSSHTD
NTILLGGVGAGGGGSSSSTKIGISAGAAGSAGGSTNDIGAGGTLGVAGGVDGAGGTGGAR
GTGVVTGAGTGTSSGAGTGVLSGAGTGTRISSGTSVSSGTRVSSGTSVSRAGEAGAGTGF
AGGASGTGFNGGAGSSGTTAGFGGSTFVFNGGQIDAATLQLMVQHMLRSEMQSQAFRAIL
ASSVHTERGLPGPKGDPGYPGSPGPPGALGHAGPEGPKGQKGSQGDHGLEGPPGIRGREG
QAGLRGEPGPPGFGVKGDRGAPGDPGPVGLAGAKGAAGVSGAPGQPGSQGFRGEAGPPGP
KGDRGLPGFQGLKGDTGDKGVRGMQGDPGLPGTPGSAGEKGSKGSAGLPGQDGTKGSRGD
QGPAGPPGLRGPAGPPGDAGLPGGHGLQGPPGIPGNPGQPGAKGETGQPGRIINAAGSSS
VGIPGPPGPSGPPGPAGPPGLSGPIGPAGLPGQPGPKGDRGFQGQPGFTVTRTDSVSSTR
AESQFGTSSSGTSRQSGIPGPPGPPGPPGRPGDSRQGPPGPPGPPGQTGYGRPGPKGEKG
DAGFAASSGTYYSGQPGPPGPAGPKGSAGAPGPRGYQGEPGVPGTPGRPGSSERVSTYAG
GHTVTGPAGPPGPPGRPGPQGIKGDPGTPGVPGSSGAISVTSGPPGPPGPPGHPGQPGSF
AASTEIRQYITDYLTRSRQTGVTGPPGPPGPPGLPGTFSGSIEDISARIIAYLQRSGSGS
GSSSSSGLSIGVQGPPGPPGPPGPASGFHTVNDLIIMLQRDDVRRYLSGLSGPPGPQGPP
GPPGASAGLSSSYTIEEVATYIFNIMTDRGIARGPPGPPGLPGTPGTPGAGGSGYSTVSI
DYSALVKNSDFRTWIRSAVQQGPPGSPGVPGQPGPPGPQGPPGVSTATVFGAGSRGYSLE
DIQRYLQGSGFRGLQGPPGPPGPQGPPGSYTGSVSYTGNFPRESIRAEVQEYLTSDNVRR
YITGQPGPQGPRGPKGERGDPGHVQGYIQSQSFTHGDTQRSSDQREISRLSETMDYSNVA
LKVTDYIKNQGLLQGYLVEGSSKTNVRAIQGPPGPPGPPGPPGYSRVIGSYGNVTADLME
FFRTHGTIPGPPGGPGAKGERGYPGPRGDKGDPGQPGLPGLPGSYTIQIPHRVQKRDTGN
RMVGRRLHRRQAGSG
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atgtactctctggtgtcagttaccacttctctgggatttagtcatcctctgggatttcct
ccagttgtcagaattcacagagacagcggcatcttcggaggaggaggattctgctgctgc
tccgacgcttgttgctcctggtggaagtggctgctgggccttctgctcctctccctcctc
ctgctgggtctcctgttcggtctcatcgcactggctgaggacgtgaggaagctgaagaat
cgagtggccaccctggaggccgagtcctctgtggctaatgctcataccagtcgactgtca
ggttcttccactaacattcaccttggaggtggaggtgcaggaacttcttctcacactgac
aacacaatactcctgggtggtgttggtgctggagggggaggctcaagttccagcactaaa
atcggaatatctgctggggctgccggttccgcgggtggcagcaccaatgacatcggtgct
ggagggacgttaggtgtggctggtggagtagatggagcaggtggaacaggtggagccagg
ggtactggtgttgtcactggtgctggtactggtacttcctctggtgccggtactggtgtt
ctctccggtgctggtactggcacccgtatttccagtggcaccagtgtttctagtggcacc
agagtttccagtggcaccagtgtttccagggctggagaagctggcgctggcactggcttt
gctggtggcgccagtgggactggtttcaatggcggcgctggcagttctggtaccaccgcc
ggttttggcggcagcacctttgtgttcaatggaggacaaatcgacgctgctactcttcag
ctgatggtccagcacatgctcagatcggaaatgcagtctcaggcattcagagctatttta
gcatcctcagtccatacagagcgaggtcttcctggacctaaaggtgatcctggttacccc
ggaagtccgggtcctccaggagcgttgggacatgcaggtcctgaaggtcctaaagggcag
aaaggaagccagggtgaccatgggctggaggggccaccaggtatcagaggtcgtgaaggt
caagcgggtcttaggggcgagccaggtcctccaggctttggagttaagggtgacagagga
gctcctggagatcctggacctgtcggcctggccggagcaaaaggtgcagcaggagtttcc
ggggccccaggtcaaccaggttctcagggtttccgtggcgaggcagggccaccgggtcct
aaaggagacagagggcttccaggatttcaaggacttaaaggcgacactggtgacaaaggt
gtcagaggaatgcaaggtgatcctggtttacctggcacgcctggatcggctggagagaaa
ggatccaaagggtcagcaggtctgcctggacaagatggtacaaaaggatcaagaggtgac
caaggacctgctggaccacctggactacgaggtcctgctgggcctccaggagatgctgga
cttccaggaggacatgggcttcaaggaccaccagggataccaggaaatccaggacaacct
ggagccaagggtgagactggtcaacctggaagaatcatcaatgcagctggttccagctct
gttggcatcccaggaccaccgggaccttctggccctcctggtcctgcaggacctcctgga
ttatcaggtcccattggtcctgctggtttgcctggtcagcctgggcctaaaggtgacagg
ggattccagggacaaccaggcttcacagtgacaaggacggacagtgtcagttcaaccaga
gctgagagtcagtttggaactagcagtagtggtacctcaagacaatctggtatacccggc
ccaccaggtccacccgggcctcctggacgtccaggagattcaaggcaaggacctccagga
cctcctgggcctccaggtcaaacaggttatggaagaccaggacctaaaggagaaaaagga
gacgcaggctttgcagccagctctggaacatattacagtggacaaccagggccacctgga
cctgctgggcctaaaggatcagcaggtgctcctggaccaaggggctaccaaggtgaacca
ggagtgccaggtaccccaggaagaccaggaagctctgagagagtgtcaacttatgctggg
ggacatacagtcactggaccagctggtccaccagggcctcctggacgcccagggccgcaa
ggaattaaaggagaccctggtactcctggtgtccctggctcttcaggtgccatttcagtc
acttccggcccacctggtcccccaggtcctcccgggcatccaggccagccgggctctttt
gctgcttctaccgagatccgccagtacattactgactatctaaccagaagcagacagact
ggtgtaactggacctccaggtccacctgggcctccaggacttcctggaaccttctcaggc
tccatagaggacatctctgctcgcatcattgcatacctgcaaagatcaggctcaggctca
ggctcaagctcaagctcaggcctcagcattggtgttcagggtcctccaggtccacctgga
cctcctggacctgcctctggattccacacagtcaatgatcttataatcatgcttcagagg
gatgatgtgaggagatatttgtcaggactgtcaggaccaccaggaccacaaggaccacca
gggccaccaggggcatctgctggtctttcaagcagctacactatagaggaggtagccacg
tatatcttcaacatcatgactgacagagggattgctagaggtccacctggaccacctggg
ctacctggtactcctgggacccctggtgcgggaggctctggctatagcacagtttcaatt
gactactctgcactggtgaaaaattcagacttccgcacatggatcaggtctgccgtgcaa
caaggtcctcctggttctccaggtgttccaggccaacctggtcctcctggccctcagggg
cctcctggagtctccactgccactgtgtttggggcaggaagtcgtggctatagcttggag
gacatccaacgttacctgcagggttctggtttcagaggtcttcaaggtccccctggtcct
ccaggtccacagggtccaccaggcagttacactggctcagtttcctacactggaaacttc
cctcgagagagcatccgtgccgaggttcaggaatatctgaccagcgataatgttcgtcgt
tacatcactggacagcctggacctcaaggaccaaggggtccaaaaggagagcgcggagac
ccaggtcacgtccaaggttacattcagagccagagcttcactcatggggacacccaacgc
agctctgatcaaagagagatcagcaggctcagtgagacgatggactactccaacgtcgct
ctgaaggttacagactacatcaagaatcaaggcctgttgcaagggtatctggttgagggc
tcctcgaaaacaaacgtgagagcaattcagggccctcctggtccacccgggcctcccgga
ccacctggttacagtcgtgtcatcgggtcctacggcaacgtcactgctgacctcatggag
ttcttcagaacccatggcaccatcccaggccctccaggcggccccggagcaaagggagaa
agaggttatccaggccccagaggagataagggagatcctggtcagccaggtctaccagga
ctaccagggtcatacactatccagattccacacagagtgcagaagcgggacacaggcaat
agaatggttggtcgtcgcctgcatcgccgccaggccggcagtggctaa
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