Solea senegalensis (Senegalese sole): 122782833
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Entry
122782833 CDS
T07721
Symbol
pnn
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03013
Nucleocytoplasmic transport
ssen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122782833 (pnn)
03015 mRNA surveillance pathway
122782833 (pnn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122782833 (pnn)
03041 Spliceosome [BR:
ssen03041
]
122782833 (pnn)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122782833 (pnn)
Spliceosome [BR:
ssen03041
]
Complex C
Other components
EJC/TREX
122782833 (pnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
122782833
NCBI-ProteinID:
XP_043903316
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Position
LG16:12902611..12911902
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AA seq
682 aa
AA seq
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MAVVVRSLQDQLEKAKEGLKNVDDNIRKLTGRDPNESRPGQIRRLGGPTAGIGGGRGRGI
NLLRRSLSEIGSGGPPVKKRDIDGALLRLAGDQRARRDARHDSDAEDDDDVKKPALQSSV
VATSKERTRRDLIQDQTMDEKGKQRNRRMFGLLMGTLQKFKQESNVSTDKQKRRSEIEQK
LEVQAEAERKKVESEKKELFEERRAKQTELRLLEQKVELAQLQEEWTSHNNRLVKYIRTK
TKPHIFYLPGKMCSATQKLHDDSNKKLNAVFEERREAFAEHLSKMESRPRRQPNRDQDGN
TAATGTDHPEEGKPAGQIVKVTGNRIDVEMEEEEEDEDEEEEKIKEEEERRVVEKKEGEE
MEGLKKAGEEGERMELSEEGSGEKEEVVEDSGEQREKAEKEASPGSEEMEVEGEQGDKRV
EDVGETDVKQQSADLQNEKTQDNQASEAAVTSQEAPDTSEPPQPSPTAGEPAPQSVKSPE
IQGSSPTPEPQPASTESAQDPVIPGLEVHNSAAENQPAEEKSEPEAPQKLAVTQEARSTT
AAPSKEEGDRGRGKKKAKHSRKSSSRSNSSSSSSSGSSSSGSSSSSSGSSRSSSSSSSSS
SSSSNSSSRSRGHDASKRKRKPSDRDRKKGEDRSHRKRGGSGGGGRDSKGSKERRKRSEE
GRGRSSRSDREHKDRDRKDKRR
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggtggtgcggagcttgcaggaccagctcgaaaaggcaaaagaaggcttgaaa
aatgtggacgataacattcgcaaactaacgggacgcgatcctaatgaatcaaggccgggt
caaatccgtcgacttggcggccccacggcaggcattggaggaggtagaggcagaggaatc
aacctgctcaggcgcagtctctcggagataggaagcggcggcccccctgtcaagaagagg
gacatcgatggagccctgctgaggctggcaggggaccagagggccaggagagatgcgcgt
cacgacagcgacgccgaggatgacgatgatgtcaaaaagccggcgttgcagtcgtctgta
gtagctacctccaaggagcgaacacgccgagacctcattcaggatcagaccatggatgag
aagggcaaacagaggaatcggcgtatgttcggcctgctgatggggacactacaaaagttc
aaacaggagtccaacgtctctacagacaagcaaaagcggcgttcagagatcgagcagaag
cttgaagttcaggcggaggcagagcgaaagaaggtagagagtgaaaagaaggagctgttt
gaggagaggagagccaaacagactgagctgaggctactggaacagaaggtggaattagcc
cagctgcaagaggagtggaccagccacaataatcgtttggtgaaatacatccgcaccaag
acaaagcctcacattttctacttgcctggaaaaatgtgctctgctacacagaaactccat
gatgactccaacaagaaactgaacgctgtgtttgaggagaggcgtgaggcttttgccgaa
cacctcagtaaaatggagtcccgcccccggaggcagccaaaccgcgaccaggacggcaac
acagcagcaacaggaacggaccacccagaggagggtaagccagcaggtcagatagtcaag
gtgacaggtaacaggatagatgtagagatggaggaagaggaggaggatgaggacgaggag
gaggaaaagataaaggaggaggaggagagacgggtggtagagaagaaggagggagaggag
atggaaggtttgaagaaggcaggtgaggagggggagagaatggagttgagtgaggagggt
agtggggaaaaggaggaggtagttgaggacagtggggagcagagggaaaaggcggagaag
gaggcaagtccaggttcagaagagatggaggttgagggggagcagggggataagagagtg
gaagacgtgggagaaacagatgttaaacagcagtccgcagacctccaaaatgaaaagacc
caagacaaccaggcctctgaagcagccgtaaccagccaagaggcaccagacaccagtgag
ccaccccaacccagtcccactgcaggggaaccagcaccacagtccgtaaaatccccagag
atccaagggtcttctcccacaccagaaccccaacctgcctctaccgagtcagcacaagat
cccgtcattcctggcttagaggttcacaactctgcagcagagaaccagcctgcagaagag
aaatcagagccagaagccccacaaaaactggcagttactcaggaggcgcgcagcaccaca
gctgctccctctaaggaggagggtgatcgtgggagagggaagaaaaaggcaaagcattca
aggaagagcagcagtcgcagtaacagctcctcttcttcttcctctggctcatcctcgagc
gggagctcgtcttcttcgtctggatcgagccgctcttcttcatcctcttcgtcctcgtca
tcttcgtcatcgaacagcagcagccgaagtcgtggccatgacgccagtaagcgcaagagg
aagccgtcggacagggacaggaagaaaggagaagacagaagtcatcgtaagagaggaggg
agtggtggaggaggaagggactcgaagggatcgaaagagaggaggaagagaagtgaggaa
ggaaggggaaggtcatcccggagcgacagggagcataaagatagagacaggaaagacaag
agacgctaa
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