Solea senegalensis (Senegalese sole): 122782858
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Entry
122782858 CDS
T07721
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1-like
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
122782858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssen04131
]
122782858
Membrane trafficking [BR:
ssen04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
122782858
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
TPR_Vps41
Clathrin
zf-Vps39_C
Motif
Other DBs
NCBI-GeneID:
122782858
NCBI-ProteinID:
XP_043903351
LinkDB
All DBs
Position
LG16:complement(7004055..7008810)
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AA seq
836 aa
AA seq
DB search
MAFKAFIKTHVYTKQEASKAKDRSSIQCLECYDRNVYIGTKNATVQHLILSSGTNGDMSP
EQITTRDGRTKKLGSNNPIVQLRAVPLFNHLLVLWDRSIIALNMFSLDPVPTLKKIQHVS
LFEVSESSFTDRGGCVGMVTSSSRRKVIHIHTVGVDRWEVVKEVPLLQDPWALAVDGTIV
CLATCDRYLLCDVETGRGEELFPHDHSRQRIIVTSAGRGEFLLNGPESLGMFVMKTGTCQ
CPPLQWSPDVLAAKVCFPYILTVQPHALLIYSMLDQQCKQTVSVHGAKGLLSTPGGVVVF
TERDIFSLRLVPLEEQIQALVGQEKVEEALLLLNGVQSHRPLDSYKDLQKTITCLAGFVH
FYQEGFSEAKDLFIKGELDPREILLLYPDIGTCLSEDFHSQLDQENRGRDLQLLWQKDRN
TFHHYLTFLGDFLRAVRGTEQDLKCSTEVDCALLRLYAELGDTENLQQLVIFPNECRLEY
CVPVLEQYKRFFALGSLYQSHGKQTDALETWVKIADGSHKDSSCSDVYGHIVWTLSQLDD
KETVWKFADWTLQRNQEIGVQLFTKRPREDRLETQDVLVLLEKHLLALVLYLEFLIHDLT
SEEESHHNRLALAYVTQMLQEEEEADLRPTRGKLQHLLWESKFYDVSTLYERVKLTALHR
EKAILLGRRGEHSQALQVLVHQERDLQAAEAYCFRAVQDQDPQELLLTLLQIYLGSEDLI
STVVDLLNNNPQAFAAEKVIQLLPDSWSVQLVSQYLFRSIRATVHQRRMVKLQKALAQVQ
LMQHKVIWMQASKTKFRLDKDEKCKVCQRVLTEPEFACSTHGELMHTSCAGLISAP
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atggcttttaaagctttcataaaaacacatgtctacacgaaacaagaagcctccaaagca
aaggacagatccagcatccagtgcctcgagtgctatgatcgaaatgtgtacatcgggacc
aaaaatgcaacagtccagcacctcatcctgtcgagcggcacaaatggagacatgagtcct
gagcagatcacaaccagagatggcagaacaaaaaaactaggatcaaacaatcctatagtg
caactgagagctgtcccacttttcaatcatttgctggttttgtgggatcgaagcattatt
gccctcaacatgttctccttagaccctgttcctactctgaagaaaatccagcatgtgtct
ttgttcgaggtgagcgagtcgtcgttcacagatcgaggaggatgtgtggggatggtgact
tcctccagccgcaggaaagtgatccatatacacacggtgggagtggacaggtgggaggtt
gtcaaggaagtcccactacttcaggatccttgggccctggcagtagatggcaccattgtg
tgtttagctacctgtgacaggtatctcctctgtgatgtcgagactgggagaggcgaggag
ctttttcctcacgatcacagcagacagcgcatcattgtaacctcagcgggccgaggggaa
ttcctcctcaatgggcctgaatcactgggcatgtttgtgatgaagacagggacttgccag
tgtcctcccctgcagtggtctccggacgtactcgcagccaaagtgtgtttcccttacatc
ctcaccgtgcagccccatgcgctattgatctacagcatgttggatcagcagtgcaaacag
actgtgagtgtccatggagcgaagggtctgctctccacgccaggtggtgtggttgtgttc
acagagagagatattttcagcctgcgcctggtgccgttggaggagcagatccaggcactc
gtaggacaagagaaggtcgaggaggcattgctgctgctgaatggagttcaaagccatcgg
ccacttgactcatacaaggatctgcagaagaccatcacgtgtctcgctggatttgttcac
ttttaccaggagggcttttcagaggccaaagatttattcataaaaggtgagctggacccc
agagaaatcctcctcctctaccctgacatagggacatgtctcagtgaagactttcactcc
cagcttgatcaagagaacagaggcagagatctccagctgctctggcaaaaggacagaaac
acatttcatcactacctgaccttcttgggagatttcctcagagccgtcagggggacggag
caggacttgaagtgctcaacagaggtggactgcgccctcctgaggctgtatgcagaactg
ggagacacagagaatctgcaacagcttgtgatatttcccaatgaatgcaggctggaatac
tgtgttcctgttttggagcaatataaaagattttttgcattaggttccctctatcaaagc
catgggaagcaaactgatgcacttgagacgtgggtgaagattgcagatggctcccacaaa
gactcctcttgctcggatgtgtacggtcacatcgtgtggaccctcagtcagctggacgac
aaagagactgtgtggaaatttgcagactggactctgcagagaaaccaagagataggagtg
cagcttttcaccaaacgtccccgagaggatcgattggaaacacaagacgtccttgttctt
ttggaaaagcacctgctggcgttggttttgtatcttgagttcctgatacatgatttgacc
agtgaggaggaaagccatcacaaccgtctggccttggcatatgttactcagatgctgcaa
gaggaagaggaagcagatttgaggccgaccagggggaagttgcaacatctgttgtgggaa
tctaaattctatgacgtctccactctatatgagagagtcaagttgacagccctgcacaga
gagaaagccattctccttggtaggagaggggaacactcccaggctctgcaggtgcttgta
caccaggagcgagacctccaggctgcagaagcctactgctttagggctgtgcaggaccag
gaccctcaggagctactgctcaccttactccaaatctacctgggctccgaggatctgatc
agcactgtagtagacctgctcaacaacaaccctcaggcctttgctgcggagaaggtcatc
cagctcctgccagactcctggtctgttcagctggtctctcaatacttattcagatctatc
agggcgaccgttcaccagcgacggatggtgaagctgcaaaaggcgctggcccaggtgcag
ctcatgcagcacaaggtgatctggatgcaggcctcgaaaaccaagttcagactggacaag
gatgagaagtgtaaggtctgtcagagagttctcacagagccggagtttgcttgtagcact
catggtgagctgatgcacacgagctgcgctgggttaatttcagcaccataa
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